LICENSE
MANIFEST.in
README.md
pyproject.toml
setup.py
src/antpack/__init__.py
src/antpack.egg-info/PKG-INFO
src/antpack.egg-info/SOURCES.txt
src/antpack.egg-info/dependency_links.txt
src/antpack.egg-info/requires.txt
src/antpack.egg-info/top_level.txt
src/antpack/ext/.cterm_finder.cpp.swp
src/antpack/ext/.cterm_finder.h.swp
src/antpack/ext/__init__.py
src/antpack/ext/ant_ext.cpp
src/antpack/ext/cterm_finder.cpp
src/antpack/ext/cterm_finder.h
src/antpack/ext/ig_aligner.cpp
src/antpack/ext/ig_aligner.h
src/antpack/ext/numbering_constants.h
src/antpack/ext/responsibility_calcs.cpp
src/antpack/ext/responsibility_calcs.h
src/antpack/ext/utilities.cpp
src/antpack/ext/utilities.h
src/antpack/ext/vj_match_counter.cpp
src/antpack/ext/vj_match_counter.h
src/antpack/ext/.vscode/settings.json
src/antpack/numbering_tools/__init__.py
src/antpack/numbering_tools/annotator_base_class.py
src/antpack/numbering_tools/paired_chain_annotator.py
src/antpack/numbering_tools/single_chain_annotator.py
src/antpack/numbering_tools/consensus_data/CTERMFINDER_CONSENSUS_H.npy
src/antpack/numbering_tools/consensus_data/CTERMFINDER_CONSENSUS_H.txt
src/antpack/numbering_tools/consensus_data/CTERMFINDER_CONSENSUS_K.npy
src/antpack/numbering_tools/consensus_data/CTERMFINDER_CONSENSUS_K.txt
src/antpack/numbering_tools/consensus_data/CTERMFINDER_CONSENSUS_L.npy
src/antpack/numbering_tools/consensus_data/CTERMFINDER_CONSENSUS_L.txt
src/antpack/numbering_tools/consensus_data/IMGT_CONSENSUS_H.npy
src/antpack/numbering_tools/consensus_data/IMGT_CONSENSUS_H.txt
src/antpack/numbering_tools/consensus_data/IMGT_CONSENSUS_K.npy
src/antpack/numbering_tools/consensus_data/IMGT_CONSENSUS_K.txt
src/antpack/numbering_tools/consensus_data/IMGT_CONSENSUS_L.npy
src/antpack/numbering_tools/consensus_data/IMGT_CONSENSUS_L.txt
src/antpack/numbering_tools/consensus_data/KABAT_CONSENSUS_H.npy
src/antpack/numbering_tools/consensus_data/KABAT_CONSENSUS_H.txt
src/antpack/numbering_tools/consensus_data/KABAT_CONSENSUS_K.npy
src/antpack/numbering_tools/consensus_data/KABAT_CONSENSUS_K.txt
src/antpack/numbering_tools/consensus_data/KABAT_CONSENSUS_L.npy
src/antpack/numbering_tools/consensus_data/KABAT_CONSENSUS_L.txt
src/antpack/numbering_tools/consensus_data/MARTIN_CONSENSUS_H.npy
src/antpack/numbering_tools/consensus_data/MARTIN_CONSENSUS_H.txt
src/antpack/numbering_tools/consensus_data/MARTIN_CONSENSUS_K.npy
src/antpack/numbering_tools/consensus_data/MARTIN_CONSENSUS_K.txt
src/antpack/numbering_tools/consensus_data/MARTIN_CONSENSUS_L.npy
src/antpack/numbering_tools/consensus_data/MARTIN_CONSENSUS_L.txt
src/antpack/numbering_tools/consensus_update_tools/__init__.py
src/antpack/numbering_tools/consensus_update_tools/generate_score_files.py
src/antpack/numbering_tools/constants/__init__.py
src/antpack/numbering_tools/constants/all_scheme_default_params.py
src/antpack/numbering_tools/constants/imgt_default_params.py
src/antpack/numbering_tools/constants/kabat_default_params.py
src/antpack/numbering_tools/constants/martin_default_params.py
src/antpack/scoring_tools/__init__.py
src/antpack/scoring_tools/categorical_mix.py
src/antpack/scoring_tools/humanization_tool.py
src/antpack/scoring_tools/sequence_liability_filters.py
src/antpack/scoring_tools/sequence_scoring_tool.py
src/antpack/scoring_tools/model_data/.~lock.dup_seq_data.csv#
src/antpack/scoring_tools/model_data/human_heavy_mixweights.npy
src/antpack/scoring_tools/model_data/human_heavy_mu.npy
src/antpack/scoring_tools/model_data/human_light_mixweights.npy
src/antpack/scoring_tools/model_data/human_light_mu.npy
src/antpack/scoring_tools/model_data/mouse_heavy_mixweights.npy
src/antpack/scoring_tools/model_data/mouse_heavy_mu.npy
src/antpack/scoring_tools/model_data/mouse_light_mixweights.npy
src/antpack/scoring_tools/model_data/mouse_light_mu.npy
src/antpack/scoring_tools/model_data/rat_heavy_mixweights.npy
src/antpack/scoring_tools/model_data/rat_heavy_mu.npy
src/antpack/scoring_tools/model_data/rhesus_heavy_mixweights.npy
src/antpack/scoring_tools/model_data/rhesus_heavy_mu.npy
src/antpack/scoring_tools/model_data/rhesus_light_mixweights.npy
src/antpack/scoring_tools/model_data/rhesus_light_mu.npy
src/antpack/scoring_tools/scoring_constants/__init__.py
src/antpack/scoring_tools/scoring_constants/allowed_imgt_pos.py
src/antpack/scoring_tools/scoring_constants/catmix_constants.py
src/antpack/scoring_tools/scoring_constants/scoring_constants.py
src/antpack/utilities/__init__.py
src/antpack/utilities/data_compile_utils.py
src/antpack/utilities/model_loader_utils.py
src/antpack/utilities/special_functions.py
src/antpack/utilities/utility_constants.py
src/antpack/utilities/vj_gene_database_writer.py
src/antpack/vj_tools/__init__.py
src/antpack/vj_tools/vj_gene_assignment.py
src/antpack/vj_tools/consensus_data/human_IGHJ_2024-05-13.fa.gz
src/antpack/vj_tools/consensus_data/human_IGHV_2024-05-13.fa.gz
src/antpack/vj_tools/consensus_data/human_IGKJ_2024-05-13.fa.gz
src/antpack/vj_tools/consensus_data/human_IGKV_2024-05-13.fa.gz
src/antpack/vj_tools/consensus_data/human_IGLJ_2024-05-13.fa.gz
src/antpack/vj_tools/consensus_data/human_IGLV_2024-05-13.fa.gz
src/antpack/vj_tools/consensus_data/mouse_IGHJ_2024-05-13.fa.gz
src/antpack/vj_tools/consensus_data/mouse_IGHV_2024-05-13.fa.gz
src/antpack/vj_tools/consensus_data/mouse_IGKJ_2024-05-13.fa.gz
src/antpack/vj_tools/consensus_data/mouse_IGKV_2024-05-13.fa.gz
src/antpack/vj_tools/consensus_data/mouse_IGLJ_2024-05-13.fa.gz
src/antpack/vj_tools/consensus_data/mouse_IGLV_2024-05-13.fa.gz
tests/test_cext_scoring.py
tests/test_liability_search_tool.py
tests/test_multi_chain_annotator.py
tests/test_sequence_scoring.py
tests/test_single_chain_annotator.py
tests/test_vj_gene_tool.py
tests/test_data/imgt_comp_scoring.csv.gz
tests/test_data/test_data.csv.gz
tests/test_data/vj_gene_testing.csv.gz