LICENSE
README.md
setup.py
anndict/__init__.py
anndict/deprecated_llm_configuration.py
anndict/deprecated_strata.py
anndict/setup_hooks.py
anndict/utils.py
anndict.egg-info/PKG-INFO
anndict.egg-info/SOURCES.txt
anndict.egg-info/dependency_links.txt
anndict.egg-info/requires.txt
anndict.egg-info/top_level.txt
anndict/adata_dict/__init__.py
anndict/adata_dict/adata_dict.py
anndict/adata_dict/adata_dict_fapply.py
anndict/adata_dict/read_write_build.py
anndict/adata_dict/spatial_dict.py
anndict/annotate/__init__.py
anndict/annotate/cells/__init__.py
anndict/annotate/cells/benchmarking/__init__.py
anndict/annotate/cells/benchmarking/agreement_metrics.py
anndict/annotate/cells/benchmarking/ai_compare_cell_type_labels.py
anndict/annotate/cells/benchmarking/label_utils.py
anndict/annotate/cells/de_novo/__init__.py
anndict/annotate/cells/de_novo/annotate_biological_process.py
anndict/annotate/cells/de_novo/annotate_cell_subtype.py
anndict/annotate/cells/de_novo/annotate_cell_subtype_by_comparison.py
anndict/annotate/cells/de_novo/annotate_cell_type.py
anndict/annotate/cells/de_novo/annotate_cell_type_by_comparison.py
anndict/annotate/cells/de_novo/automated_clustering.py
anndict/annotate/cells/de_novo/base.py
anndict/annotate/cells/de_novo/cell_type_score.py
anndict/annotate/cells/label_transfer/__init__.py
anndict/annotate/cells/label_transfer/harmony.py
anndict/annotate/cells/label_transfer/stabilizing_classifier.py
anndict/annotate/genes/__init__.py
anndict/annotate/genes/genes.py
anndict/automated_label_management/__init__.py
anndict/automated_label_management/clean_single_column.py
anndict/automated_label_management/unify_columns_between_adata.py
anndict/automated_label_management/unify_columns_within_adata.py
anndict/llm/__init__.py
anndict/llm/llm_call.py
anndict/llm/llm_manager.py
anndict/llm/llm_provider_base.py
anndict/llm/llm_provider_implementations.py
anndict/llm/llm_providers.py
anndict/llm/parse_llm_responses.py
anndict/visualize/__init__.py
anndict/visualize/benchmarking.py
anndict/visualize/cells.py
anndict/visualize/genes.py
anndict/wrappers/__init__.py
anndict/wrappers/anndata_.py
anndict/wrappers/anndictionary_.py
anndict/wrappers/scanpy_.py
anndict/wrappers/squidpy_.py
anndict/wrappers/uce_.py