LICENSE
README.md
pyproject.toml
anndict/__init__.py
anndict/deprecated_llm_configuration.py
anndict/deprecated_strata.py
anndict.egg-info/PKG-INFO
anndict.egg-info/SOURCES.txt
anndict.egg-info/dependency_links.txt
anndict.egg-info/requires.txt
anndict.egg-info/top_level.txt
anndict/adata_dict/__init__.py
anndict/adata_dict/adata_dict.py
anndict/adata_dict/adata_dict_fapply.py
anndict/adata_dict/adata_dict_utils.py
anndict/adata_dict/add_stratification.py
anndict/adata_dict/build.py
anndict/adata_dict/concatenate.py
anndict/adata_dict/read.py
anndict/adata_dict/utils.py
anndict/adata_dict/write.py
anndict/annotate/__init__.py
anndict/annotate/cells/__init__.py
anndict/annotate/cells/benchmarking/__init__.py
anndict/annotate/cells/benchmarking/agreement_metrics.py
anndict/annotate/cells/benchmarking/ai_compare_cell_type_labels.py
anndict/annotate/cells/benchmarking/label_utils.py
anndict/annotate/cells/de_novo/__init__.py
anndict/annotate/cells/de_novo/annotate_biological_process.py
anndict/annotate/cells/de_novo/annotate_cell_subtype.py
anndict/annotate/cells/de_novo/annotate_cell_subtype_by_comparison.py
anndict/annotate/cells/de_novo/annotate_cell_type.py
anndict/annotate/cells/de_novo/annotate_cell_type_by_comparison.py
anndict/annotate/cells/de_novo/automated_clustering.py
anndict/annotate/cells/de_novo/base.py
anndict/annotate/cells/de_novo/cell_type_score.py
anndict/annotate/cells/label_transfer/__init__.py
anndict/annotate/cells/label_transfer/harmony.py
anndict/annotate/cells/label_transfer/stabilizing_classifier.py
anndict/annotate/genes/__init__.py
anndict/annotate/genes/make_cell_type_gene_list.py
anndict/automated_label_management/__init__.py
anndict/automated_label_management/unify_columns_between_adata.py
anndict/automated_label_management/unify_columns_within_adata.py
anndict/automated_label_management/clean_single_column/__init__.py
anndict/automated_label_management/clean_single_column/in_adata_obs.py
anndict/automated_label_management/clean_single_column/in_adata_var.py
anndict/llm/__init__.py
anndict/llm/base_llm_initializer.py
anndict/llm/custom_llm_initalizers.py
anndict/llm/default_llm_initializer.py
anndict/llm/llm_call.py
anndict/llm/llm_manager.py
anndict/llm/parse_llm_response.py
anndict/llm/provider_initializer_mapping.py
anndict/plot/__init__.py
anndict/plot/agreement_bar_plots.py
anndict/plot/annotate_genes_on_heatmap.py
anndict/plot/confusion_matrix_plots.py
anndict/plot/module_score_plots.py
anndict/plot/sankey_plots.py
anndict/plot/stabilizing_classifier_plots.py
anndict/utils/__init__.py
anndict/utils/anndata_.py
anndict/utils/anndictionary_.py
anndict/utils/pca_density_filter.py
anndict/utils/read_spatial_data.py
anndict/utils/uce_.py
anndict/wrappers/__init__.py
anndict/wrappers/anndictionary_.py
anndict/wrappers/scanpy_.py
anndict/wrappers/squidpy_.py