LICENSE
README.md
pyproject.toml
src/AMRfior/AMRfior.py
src/AMRfior/__init__.py
src/AMRfior/constants.py
src/AMRfior/databases.py
src/AMRfior/gene_stats.py
src/AMRfior/utils.py
src/AMRfior/workflow.py
src/AMRfior.egg-info/PKG-INFO
src/AMRfior.egg-info/SOURCES.txt
src/AMRfior.egg-info/dependency_links.txt
src/AMRfior.egg-info/entry_points.txt
src/AMRfior.egg-info/top_level.txt
src/AMRfior/databases/card/blast_aa/protein_fasta_protein_homolog_model_SID_blastdb.pdb
src/AMRfior/databases/card/blast_aa/protein_fasta_protein_homolog_model_SID_blastdb.phr
src/AMRfior/databases/card/blast_aa/protein_fasta_protein_homolog_model_SID_blastdb.pin
src/AMRfior/databases/card/blast_aa/protein_fasta_protein_homolog_model_SID_blastdb.pjs
src/AMRfior/databases/card/blast_aa/protein_fasta_protein_homolog_model_SID_blastdb.pot
src/AMRfior/databases/card/blast_aa/protein_fasta_protein_homolog_model_SID_blastdb.psq
src/AMRfior/databases/card/blast_aa/protein_fasta_protein_homolog_model_SID_blastdb.ptf
src/AMRfior/databases/card/blast_aa/protein_fasta_protein_homolog_model_SID_blastdb.pto
src/AMRfior/databases/card/blast_dna/nucleotide_fasta_protein_homolog_model_SID_blastdb.ndb
src/AMRfior/databases/card/blast_dna/nucleotide_fasta_protein_homolog_model_SID_blastdb.nhr
src/AMRfior/databases/card/blast_dna/nucleotide_fasta_protein_homolog_model_SID_blastdb.nin
src/AMRfior/databases/card/blast_dna/nucleotide_fasta_protein_homolog_model_SID_blastdb.njs
src/AMRfior/databases/card/blast_dna/nucleotide_fasta_protein_homolog_model_SID_blastdb.not
src/AMRfior/databases/card/blast_dna/nucleotide_fasta_protein_homolog_model_SID_blastdb.nsq
src/AMRfior/databases/card/blast_dna/nucleotide_fasta_protein_homolog_model_SID_blastdb.ntf
src/AMRfior/databases/card/blast_dna/nucleotide_fasta_protein_homolog_model_SID_blastdb.nto
src/AMRfior/databases/card/bowtie2/nucleotide_fasta_protein_homolog_model_SID_bowtie2db.1.bt2
src/AMRfior/databases/card/bowtie2/nucleotide_fasta_protein_homolog_model_SID_bowtie2db.2.bt2
src/AMRfior/databases/card/bowtie2/nucleotide_fasta_protein_homolog_model_SID_bowtie2db.3.bt2
src/AMRfior/databases/card/bowtie2/nucleotide_fasta_protein_homolog_model_SID_bowtie2db.4.bt2
src/AMRfior/databases/card/bowtie2/nucleotide_fasta_protein_homolog_model_SID_bowtie2db.rev.1.bt2
src/AMRfior/databases/card/bowtie2/nucleotide_fasta_protein_homolog_model_SID_bowtie2db.rev.2.bt2
src/AMRfior/databases/card/bwa/nucleotide_fasta_protein_homolog_model_SID_bwadb.amb
src/AMRfior/databases/card/bwa/nucleotide_fasta_protein_homolog_model_SID_bwadb.ann
src/AMRfior/databases/card/bwa/nucleotide_fasta_protein_homolog_model_SID_bwadb.bwt
src/AMRfior/databases/card/bwa/nucleotide_fasta_protein_homolog_model_SID_bwadb.pac
src/AMRfior/databases/card/bwa/nucleotide_fasta_protein_homolog_model_SID_bwadb.sa
src/AMRfior/databases/card/diamond/protein_fasta_protein_homolog_model_SID_diamonddb.dmnd
src/AMRfior/databases/card/minimap2/nucleotide_fasta_protein_homolog_model_SID_minimap2db
src/AMRfior/databases/resfinder/blast_aa/all_aa_blastdb.pdb
src/AMRfior/databases/resfinder/blast_aa/all_aa_blastdb.phr
src/AMRfior/databases/resfinder/blast_aa/all_aa_blastdb.pin
src/AMRfior/databases/resfinder/blast_aa/all_aa_blastdb.pjs
src/AMRfior/databases/resfinder/blast_aa/all_aa_blastdb.pot
src/AMRfior/databases/resfinder/blast_aa/all_aa_blastdb.psq
src/AMRfior/databases/resfinder/blast_aa/all_aa_blastdb.ptf
src/AMRfior/databases/resfinder/blast_aa/all_aa_blastdb.pto
src/AMRfior/databases/resfinder/blast_dna/all_blastdb.ndb
src/AMRfior/databases/resfinder/blast_dna/all_blastdb.nhr
src/AMRfior/databases/resfinder/blast_dna/all_blastdb.nin
src/AMRfior/databases/resfinder/blast_dna/all_blastdb.njs
src/AMRfior/databases/resfinder/blast_dna/all_blastdb.not
src/AMRfior/databases/resfinder/blast_dna/all_blastdb.nsq
src/AMRfior/databases/resfinder/blast_dna/all_blastdb.ntf
src/AMRfior/databases/resfinder/blast_dna/all_blastdb.nto
src/AMRfior/databases/resfinder/bowtie2/all_bowtie2db.1.bt2
src/AMRfior/databases/resfinder/bowtie2/all_bowtie2db.2.bt2
src/AMRfior/databases/resfinder/bowtie2/all_bowtie2db.3.bt2
src/AMRfior/databases/resfinder/bowtie2/all_bowtie2db.4.bt2
src/AMRfior/databases/resfinder/bowtie2/all_bowtie2db.rev.1.bt2
src/AMRfior/databases/resfinder/bowtie2/all_bowtie2db.rev.2.bt2
src/AMRfior/databases/resfinder/bwa/all_bwadb.amb
src/AMRfior/databases/resfinder/bwa/all_bwadb.ann
src/AMRfior/databases/resfinder/bwa/all_bwadb.bwt
src/AMRfior/databases/resfinder/bwa/all_bwadb.pac
src/AMRfior/databases/resfinder/bwa/all_bwadb.sa
src/AMRfior/databases/resfinder/diamond/all_aa_diamonddb.dmnd
src/AMRfior/databases/resfinder/minimap2/all_minimap2db