LICENSE
README.md
pyproject.toml
aci/__init__.py
aci/aci.py
aci/utils/__init__.py
aci/utils/amplicon_splitting.py
aci/utils/divide_chrom_by_span.py
aci/utils/genome_depth.py
aci/utils/get_amplicon_counts.py
aci/utils/get_coverage.py
aci/utils/get_paired_read_positions.py
aci/utils/get_unpaired_read_positions.py
aci/utils/group_create.py
aci/utils/group_mean.py
aci/utils/is_paired.py
aci/utils/load_bed_intervals.py
aci/utils/parse_args.py
aci/utils/plotting_amplicons.py
aci/utils/plotting_boxplot.py
aci/utils/plotting_depth.py
aci/utils/prep.py
aci/utils/process_bams_in_parallel.py
aci/utils/read_and_assign.py
aci/utils/split_dataframe.py
amplicon_coverage_inspector.egg-info/PKG-INFO
amplicon_coverage_inspector.egg-info/SOURCES.txt
amplicon_coverage_inspector.egg-info/dependency_links.txt
amplicon_coverage_inspector.egg-info/entry_points.txt
amplicon_coverage_inspector.egg-info/requires.txt
amplicon_coverage_inspector.egg-info/top_level.txt
tests/test_aci.py
tests/test_amplicon_splitting.py
tests/test_divide_chrom_by_span.py
tests/test_genome_depth.py
tests/test_get_amplicon_counts.py
tests/test_get_coverage.py
tests/test_get_paired_read_positions.py
tests/test_get_unpaired_read_positions.py
tests/test_group_create.py
tests/test_group_mean.py
tests/test_is_paired.py
tests/test_load_bed_intervals.py
tests/test_parse_args.py
tests/test_plotting_amplicons.py
tests/test_plotting_boxplot.py
tests/test_plotting_depth.py
tests/test_prep.py
tests/test_process_bams_in_parallel.py
tests/test_read_and_assign.py
tests/test_split_dataframe.py