.gitignore
LICENSE
README.md
setup.py
alto/__init__.py
alto/__main__.py
alto/util.py
alto/commands/__init__.py
alto/commands/add_method.py
alto/commands/check_sample_sheet.py
alto/commands/create_input_stub.py
alto/commands/download_method.py
alto/commands/parse_monitoring_log.py
alto/commands/remove_method.py
alto/commands/run.py
alto/commands/sample_sheet.py
alto/commands/upload.py
alto/commands/workspace_storage_estimate.py
alto/tests/__init__.py
alto/tests/command_tests.py
alto/tests/test.json
alto/tests/inputs/echo.wdl
alto/tests/inputs/flowcell1/s1/s1_I1.fastq.gz
alto/tests/inputs/flowcell1/s1/s1_R1.fastq.gz
alto/tests/inputs/flowcell1/s1/s1_R2.fastq.gz
alto/tests/inputs/flowcell1/s2/s2_I1.fastq.gz
alto/tests/inputs/flowcell1/s2/s2_R1.fastq.gz
alto/tests/inputs/flowcell1/s2/s2_R2.fastq.gz
alto/tests/inputs/flowcell2/s1/s1_I1.fastq.gz
alto/tests/inputs/flowcell2/s1/s1_R1.fastq.gz
alto/tests/inputs/flowcell2/s1/s1_R2.fastq.gz
alto/tests/inputs/flowcell2/s2/s2_I1.fastq.gz
alto/tests/inputs/flowcell2/s2/s2_R1.fastq.gz
alto/tests/inputs/flowcell2/s2/s2_R2.fastq.gz
alto/tests/inputs/test_sample/test_sample_S1_L001_I1_001.fastq.gz
alto/tests/inputs/test_sample/test_sample_S1_L001_R1_001.fastq.gz
alto/tests/inputs/test_sample/test_sample_S1_L001_R2_001.fastq.gz
altocumulus.egg-info/PKG-INFO
altocumulus.egg-info/SOURCES.txt
altocumulus.egg-info/dependency_links.txt
altocumulus.egg-info/entry_points.txt
altocumulus.egg-info/not-zip-safe
altocumulus.egg-info/requires.txt
altocumulus.egg-info/top_level.txt