LICENSE.txt
MANIFEST.in
README.md
pyproject.toml
alpharaw/__init__.py
alpharaw/cli.py
alpharaw/ms_data_base.py
alpharaw/mzml.py
alpharaw/sciex.py
alpharaw/thermo.py
alpharaw.egg-info/PKG-INFO
alpharaw.egg-info/SOURCES.txt
alpharaw.egg-info/dependency_links.txt
alpharaw.egg-info/entry_points.txt
alpharaw.egg-info/requires.txt
alpharaw.egg-info/top_level.txt
alpharaw/dia/normal_dia.py
alpharaw/ext/__init__.py
alpharaw/ext/sciex/Clearcore2.Compression.dll
alpharaw/ext/sciex/Clearcore2.Data.Acquisition.Client.dll
alpharaw/ext/sciex/Clearcore2.Data.Acquisition.Contracts.dll
alpharaw/ext/sciex/Clearcore2.Data.AnalystDataProvider.dll
alpharaw/ext/sciex/Clearcore2.Data.Client.dll
alpharaw/ext/sciex/Clearcore2.Data.Common.dll
alpharaw/ext/sciex/Clearcore2.Data.CommonInterfaces.dll
alpharaw/ext/sciex/Clearcore2.Data.Contracts.dll
alpharaw/ext/sciex/Clearcore2.Data.Core.dll
alpharaw/ext/sciex/Clearcore2.Data.Wiff2.dll
alpharaw/ext/sciex/Clearcore2.Data.WiffReader.dll
alpharaw/ext/sciex/Clearcore2.Data.dll
alpharaw/ext/sciex/Clearcore2.DataService.dll
alpharaw/ext/sciex/Clearcore2.Devices.Types.dll
alpharaw/ext/sciex/Clearcore2.Domain.Acquisition.Methods.MassSpec.dll
alpharaw/ext/sciex/Clearcore2.Domain.Acquisition.dll
alpharaw/ext/sciex/Clearcore2.Infrastructure.dll
alpharaw/ext/sciex/Clearcore2.InternalRawXYProcessing.dll
alpharaw/ext/sciex/Clearcore2.Muni.dll
alpharaw/ext/sciex/Clearcore2.RawXYProcessing.dll
alpharaw/ext/sciex/Clearcore2.StructuredStorage.dll
alpharaw/ext/sciex/Clearcore2.UserLog.Types.dll
alpharaw/ext/sciex/Clearcore2.Utility.dll
alpharaw/ext/sciex/Clearcore2.XmlHelpers.dll
alpharaw/ext/sciex/Sciex.Clearcore.FMan.dll
alpharaw/ext/sciex/Sciex.Data.Processing.dll
alpharaw/ext/sciex/Sciex.Data.SimpleTypes.dll
alpharaw/ext/sciex/Sciex.Data.XYData.dll
alpharaw/ext/sciex/Sciex.FMan.dll
alpharaw/ext/sciex/Sciex.Wiff.dll
alpharaw/ext/sciex/SciexToolKit.dll
alpharaw/ext/sciex/WiffOps4Python.dll
alpharaw/ext/sciex/protobuf-net.dll
alpharaw/ext/thermo_fisher/THERMO_LICENSE.txt
alpharaw/ext/thermo_fisher/ThermoFisher.CommonCore.Data.dll
alpharaw/ext/thermo_fisher/ThermoFisher.CommonCore.RawFileReader.dll
alpharaw/feature/__init__.py
alpharaw/feature/centroids.py
alpharaw/feature/chem.py
alpharaw/feature/finding.py
alpharaw/feature/hills.py
alpharaw/feature/isotope_pattern.py
alpharaw/legacy_msdata/__init__.py
alpharaw/legacy_msdata/mgf.py
alpharaw/match/__init__.py
alpharaw/match/mass_calibration.py
alpharaw/match/match_utils.py
alpharaw/match/psm_match.py
alpharaw/match/psm_match_alphatims.py
alpharaw/match/spec_finder.py
alpharaw/raw_access/__init__.py
alpharaw/raw_access/clr_utils.py
alpharaw/raw_access/pysciexwifffilereader.py
alpharaw/raw_access/pythermorawfilereader.py
alpharaw/utils/__init__.py
alpharaw/utils/centroiding.py
alpharaw/utils/df_processing.py
alpharaw/utils/ms_path_utils.py
alpharaw/utils/timstof.py
alpharaw/viz/__init__.py
alpharaw/viz/df_utils.py
alpharaw/viz/plot_utils.py
alpharaw/viz/psm_plot.py
alpharaw/viz/xic_plot.py
alpharaw/viz/xic_plot_tims.py
alpharaw/wrappers/__init__.py
alpharaw/wrappers/alphapept_wrapper.py
alpharaw/wrappers/alphatims_wrapper.py
docs/conf.py
requirements/requirements.txt
requirements/requirements_development.txt
requirements/requirements_docs.txt
requirements/requirements_loose.txt
requirements/requirements_tests.txt
requirements/requirements_viz.txt