# Python
__pycache__/
*.py[cod]
*$py.class
*.so
.Python
build/
develop-eggs/
dist/
downloads/
eggs/
.eggs/
lib/
lib64/
parts/
sdist/
var/
wheels/
*.egg-info/
.installed.cfg
*.egg

# Virtual environments
.env
.venv
env/
venv/
ENV/

# IDE
.idea/
.vscode/
*.swp
*.swo

# Jupyter
.ipynb_checkpoints/

# Testing
.pytest_cache/
.coverage
htmlcov/

# Model weights and data (large files)
*.pt
*.pth
*.ckpt
weights/
*.parquet

# Logs
*.log
log.txt

# Test data
**/mock_data/

# Debug scripts (keep in repo but can be gitignored if desired)
# debug-import.py
# test-import.py
# test-import2.py

# Exploration / experiment outputs
explore/

# SLURM job outputs
scripts/*.out
scripts/*.err

# OS
.DS_Store
Thumbs.db
docs/_build/

# Hatch VCS
src/alphagenome_pytorch/_version.py
