"""Finetuning utilities for AlphaGenome."""

from alphagenome_ft.finetune.config import (
    TrackInfo,
    HeadSpec,
    load_targets_config,
    prepare_head_specs,
    validate_head_specs,
)
from alphagenome_ft.finetune.data import (
    get_fold_split,
    BigWigDataModule,
    build_interval,
    load_intervals_from_bed,
    load_intervals_from_dataframe,
    prepare_intervals_from_fold,
    prepare_intervals_from_split,
    build_fasta_index,
    prepare_batch,
)
from alphagenome_ft.finetune.train import (
    register_predefined_heads,
    create_optimizer,
    train,
)

__all__ = [
    # config
    'TrackInfo',
    'HeadSpec',
    'load_targets_config',
    'prepare_head_specs',
    'validate_head_specs',
    # data
    'get_fold_split',
    'BigWigDataModule',
    'build_interval',
    'load_intervals_from_bed',
    'load_intervals_from_dataframe',
    'prepare_intervals_from_fold',
    'prepare_intervals_from_split',
    'build_fasta_index',
    'prepare_batch',
    # train
    'register_predefined_heads',
    'create_optimizer',
    'train',
]
