.gitignore
LICENSE
README.md
requirements.txt
setup.py
.github/workflows/algotom_ga.yml
algotom/__init__.py
algotom.egg-info/PKG-INFO
algotom.egg-info/SOURCES.txt
algotom.egg-info/dependency_links.txt
algotom.egg-info/requires.txt
algotom.egg-info/top_level.txt
algotom/io/__init__.py
algotom/io/converter.py
algotom/io/loadersaver.py
algotom/post/__init__.py
algotom/post/postprocessing.py
algotom/prep/__init__.py
algotom/prep/calculation.py
algotom/prep/conversion.py
algotom/prep/correction.py
algotom/prep/filtering.py
algotom/prep/phase.py
algotom/prep/removal.py
algotom/rec/__init__.py
algotom/rec/reconstruction.py
algotom/util/__init__.py
algotom/util/calibration.py
algotom/util/correlation.py
algotom/util/simulation.py
algotom/util/utility.py
examples/example_01_explore_hdf_tomo_data.py
examples/example_02_reconstruct_360_degree_scan_with_offset_center.py
examples/example_03_reconstruct_few_slices_grid_scan_with_offset_center.py
examples/example_04_reconstruct_helical_scan_with_offset_center.py
examples/example_05_reconstruct_std_scan.py
examples/example_05_reconstruct_std_scan_full_size.py
examples/example_06_reconstruct_std_scan_with_distortion_correction.py
examples/example_07_full_reconstruction_a_grid_scan_step_01.py
examples/example_07_full_reconstruction_a_grid_scan_step_02.py
examples/example_07_full_reconstruction_a_grid_scan_step_03_downsample.py
examples/example_08_generate_simulation_data.py
examples/example_09_generate_tilted_sinogram.py
examples/example_10_pre_process_data_in_the_projection_space.py
examples/common_data_processing_workflow/full_reconstruction/full_reconstruction_hdf_input_dls_format.py
examples/common_data_processing_workflow/full_reconstruction/full_reconstruction_tif_input.py
examples/pre_processing_for_cone_beam/step1_convert_tiffs_to_hdf.py
examples/pre_processing_for_cone_beam/step2_pre_processing.py
examples/pre_processing_for_cone_beam/step3_convert_back_to_tiffs.py
examples/speckle_based_tomography/reconstruct_from_phase_projections.py
examples/speckle_based_tomography/reconstruct_single_slice_from_raw_data.py
examples/speckle_based_tomography/reconstruct_single_slice_from_raw_data_DLS.py
examples/speckle_based_tomography/retrieve_phase_all_projections.py
examples/speckle_based_tomography/retrieve_phase_all_projections_DLS.py
examples/speckle_based_tomography/retrieve_phase_single_projection.py
examples/speckle_based_tomography/run_cluster.py
examples/speckle_based_tomography/i12_data/full_reconstruction_from_phase_shift_projections.py
examples/speckle_based_tomography/i12_data/reconstruct_single_slice_from_raw_data.py
examples/speckle_based_tomography/i12_data/retrieve_phase_all_projections.py
examples/speckle_based_tomography/i12_data/retrieve_phase_single_projection.py
examples/time_series_tomography/reconstruct_few_slices_each_frame.py
examples/time_series_tomography/reconstruct_full_each_frame.py
examples/time_series_tomography/reconstruct_single_slice_every_frame.py
examples/utilities/run_bash_script_from_python_script.py
examples/utilities/run_script_CLI.py
figs/readme/Herculaneum_scroll.jpg
figs/readme/Little_foot.jpg
figs/readme/Moon_rock_Mars_meteorite.jpg
figs/readme/data_processing_space.png
figs/readme/double_wedge_filter.jpg
figs/readme/grid_scan.jpg
figs/readme/helical_scan.jpg
figs/readme/logo.png
figs/readme/logo2.png
figs/readme/reslicing.jpg
figs/readme/simulation.png
figs/readme/speckle_based_tomography.png
figs/readme/thumbnail.png
tests/__init__.py
tests/test_io/__init__.py
tests/test_io/test_converter.py
tests/test_io/test_loadersaver.py
tests/test_post/__init__.py
tests/test_post/test_postprocessing.py
tests/test_prep/__init__.py
tests/test_prep/test_calculation.py
tests/test_prep/test_conversion.py
tests/test_prep/test_correction.py
tests/test_prep/test_filtering.py
tests/test_prep/test_phase.py
tests/test_prep/test_removal.py
tests/test_rec/__init__.py
tests/test_rec/test_reconstruction.py
tests/test_util/__init__.py
tests/test_util/test_calibration.py
tests/test_util/test_correlation.py
tests/test_util/test_simulation.py
tests/test_util/test_utility.py