README.rst
setup.cfg
setup.py
aldy/__init__.py
aldy/__main__.py
aldy/cn.py
aldy/common.py
aldy/coverage.py
aldy/diplotype.py
aldy/gene.py
aldy/genotype.py
aldy/lpinterface.py
aldy/major.py
aldy/minor.py
aldy/remap.py
aldy/sam.py
aldy/solutions.py
aldy/version.py
aldy.egg-info/PKG-INFO
aldy.egg-info/SOURCES.txt
aldy.egg-info/dependency_links.txt
aldy.egg-info/entry_points.txt
aldy.egg-info/requires.txt
aldy.egg-info/top_level.txt
aldy/resources/LICENSE.rst
aldy/resources/__init__.py
aldy/resources/genes/__init__.py
aldy/resources/genes/cyp2a6.yml
aldy/resources/genes/cyp2c19.yml
aldy/resources/genes/cyp2c8.yml
aldy/resources/genes/cyp2c9.yml
aldy/resources/genes/cyp2d6.yml
aldy/resources/genes/cyp3a4.yml
aldy/resources/genes/cyp3a5.yml
aldy/resources/genes/cyp4f2.yml
aldy/resources/genes/dpyd.yml
aldy/resources/genes/tpmt.yml
aldy/resources/profiles/__init__.py
aldy/resources/profiles/illumina.profile
aldy/resources/profiles/pgrnseq-v1.profile
aldy/resources/profiles/pgrnseq-v2.profile
aldy/tests/__init__.py
aldy/tests/conftest.py
aldy/tests/test_cn_real.py
aldy/tests/test_cn_synthetic.py
aldy/tests/test_diplotype_real.py
aldy/tests/test_diplotype_synthetic.py
aldy/tests/test_full.py
aldy/tests/test_gene.py
aldy/tests/test_major_real.py
aldy/tests/test_major_synthetic.py
aldy/tests/test_minor_real.py
aldy/tests/test_minor_synthetic.py
aldy/tests/test_paper.py
aldy/tests/resources/HARD.dump
aldy/tests/resources/INS.dump
aldy/tests/resources/NA10860.bai
aldy/tests/resources/NA10860.bam
aldy/tests/resources/NA10860.out.expected
aldy/tests/resources/NA10860.profile
aldy/tests/resources/NA10860.vcf.expected
aldy/tests/resources/__init__.py
aldy/tests/resources/data-illumina.json
aldy/tests/resources/data-pgx1.json
aldy/tests/resources/data-pgx2.json
aldy/tests/resources/toy.yml