//
// Created by Aleksey Komissarov on 02/09/15.
//

#include "settings.hpp"

namespace Settings {

    uint32_t MINIMAL_READ_LENGTH = 30;
    uint32_t TRUE_ERRORS = 1;
    uint32_t TRUE_NOT_ERRORS = 20;
    uint32_t TRUE_REF_ERRORS = 1;
    uint32_t PRE_ERRORS = 2;
    uint32_t K = 23;
    uint32_t JFK = 23;
    uint32_t STIRKA_FILL_OVERLAP = 0;
    uint32_t STIRKA_RESOLVE_SNP = 0;
    uint32_t MIN_Q = 10;
    uint32_t MIN_MI = 0;
    uint32_t MIN_MI_N = 0;
    uint32_t MIN_MA = 0;
    uint32_t TRIM_LOW_COV_TOLERANCE = 20;
    uint32_t VERBOSE = 0;
    uint32_t COVERAGE = 0;
    uint32_t MERGE = 0;
    uint32_t CORRECTION_LEVEL = 0;
    uint32_t INDEX_SIZE = 11;
}