.flake8
.gitignore
LICENSE
README.md
pyproject.toml
setup.py
.github/ISSUE_TEMPLATE/bug_report.md
.github/ISSUE_TEMPLATE/feature_request.md
.github/ISSUE_TEMPLATE/user-story.md
.github/workflows/init.yml
.github/workflows/tag_and_publish.yml
.github/workflows/test_and_lint.yml
doc_template/Makefile
doc_template/make.bat
doc_template/source/conf.py
doc_template/source/index.rst
doc_template/source/_static/dark-logo.svg
doc_template/source/_static/favicon.ico
doc_template/source/_static/light-logo.svg
scratch/roi_traces.h5
src/pipeline_util.py
src/aind_ophys_pipeline_utils/__init__.py
src/aind_ophys_pipeline_utils/demixing_utils.py
src/aind_ophys_pipeline_utils/dff_utils.py
src/aind_ophys_pipeline_utils/neuropil_correction_utils.py
src/aind_ophys_pipeline_utils/run_util.py
src/aind_ophys_pipeline_utils/segmentation_utils.py
src/aind_ophys_pipeline_utils/suite2p_motion_correction_utils.py
src/aind_ophys_pipeline_utils/trace_extraction_utils.py
src/aind_ophys_pipeline_utils.egg-info/PKG-INFO
src/aind_ophys_pipeline_utils.egg-info/SOURCES.txt
src/aind_ophys_pipeline_utils.egg-info/dependency_links.txt
src/aind_ophys_pipeline_utils.egg-info/requires.txt
src/aind_ophys_pipeline_utils.egg-info/top_level.txt
tests/__init__.py
tests/conftest.py
tests/test_demixing_utils.py
tests/test_dff_utils.py
tests/test_neuropil_correction_utils.py
tests/test_segmentation_utils.py
tests/test_suite2p_motion_correction_utils.py
tests/test_trace_extraction_utils.py