.flake8
.gitignore
LICENSE
README.md
pyproject.toml
setup.py
test.fcsv
test2.fcsv
testxyz.fcsv
.github/ISSUE_TEMPLATE/bug_report.md
.github/ISSUE_TEMPLATE/feature_request.md
.github/ISSUE_TEMPLATE/user-story.md
.github/workflows/tag_and_publish.yml
.github/workflows/test_and_lint.yml
doc_template/Makefile
doc_template/make.bat
doc_template/source/conf.py
doc_template/source/_static/dark-logo.svg
doc_template/source/_static/favicon.ico
doc_template/source/_static/light-logo.svg
scripts/run_linters_and_checks.sh
src/aind_mri_utils/__init__.py
src/aind_mri_utils/arc_angles.py
src/aind_mri_utils/chemical_shift.py
src/aind_mri_utils/coordinate_systems.py
src/aind_mri_utils/headframe_rotation.py
src/aind_mri_utils/manual_keypoints.py
src/aind_mri_utils/measurement.py
src/aind_mri_utils/meshes.py
src/aind_mri_utils/optimization.py
src/aind_mri_utils/planning.py
src/aind_mri_utils/plots.py
src/aind_mri_utils/reticle_calibrations.py
src/aind_mri_utils/rotations.py
src/aind_mri_utils/sitk_volume.py
src/aind_mri_utils/utils.py
src/aind_mri_utils.egg-info/PKG-INFO
src/aind_mri_utils.egg-info/SOURCES.txt
src/aind_mri_utils.egg-info/dependency_links.txt
src/aind_mri_utils.egg-info/requires.txt
src/aind_mri_utils.egg-info/top_level.txt
src/aind_mri_utils/file_io/__init__.py
src/aind_mri_utils/file_io/image_files.py
src/aind_mri_utils/file_io/obj_files.py
src/aind_mri_utils/file_io/simpleitk.py
src/aind_mri_utils/file_io/slicer_files.py
tests/__init__.py
tests/test_coordinate_systems.py
tests/test_file_io_obj_files.py
tests/test_file_io_simpleitk.py
tests/test_file_io_slicer_files.py
tests/test_headframe_rotation.py
tests/test_manual_keypoints.py
tests/test_measurments.py
tests/test_optimization.py
tests/test_plots.py
tests/test_rotations.py
tests/test_sitk.py
tests/test_utils.py