.flake8
.gitignore
LICENSE
README.md
pyproject.toml
setup.py
.github/ISSUE_TEMPLATE/bug_report.md
.github/ISSUE_TEMPLATE/feature_request.md
.github/ISSUE_TEMPLATE/user-story.md
.github/workflows/init.yml
.github/workflows/tag_and_publish.yml
.github/workflows/test_and_lint.yml
doc_template/Makefile
doc_template/make.bat
doc_template/source/conf.py
doc_template/source/index.rst
doc_template/source/_static/dark-logo.svg
doc_template/source/_static/favicon.ico
doc_template/source/_static/light-logo.svg
notebooks/UnderstandImplantVariability.py
notebooks/calculate_headframe_transforms.py
notebooks/calibration_notebook.py
notebooks/calibration_notebook_parallax.py
notebooks/check_calibration.py
notebooks/find_implant_hole_alignment.py
notebooks/find_trajectory_from_calibrated_probe.py
notebooks/headframe_centers_of_mass.py
notebooks/plan_target_insertions.py
notebooks/plan_target_insertions_implantmodel.py
notebooks/plan_target_insertions_v2.py
src/aind_mri_targeting/__init__.py
src/aind_mri_targeting/headframe_rotations.py
src/aind_mri_targeting/implant_rotations.py
src/aind_mri_targeting/planning.py
src/aind_mri_targeting/util.py
src/aind_mri_targeting.egg-info/PKG-INFO
src/aind_mri_targeting.egg-info/SOURCES.txt
src/aind_mri_targeting.egg-info/dependency_links.txt
src/aind_mri_targeting.egg-info/entry_points.txt
src/aind_mri_targeting.egg-info/requires.txt
src/aind_mri_targeting.egg-info/top_level.txt
src/aind_mri_targeting/scripts/__init__.py
src/aind_mri_targeting/scripts/calculate_headframe_transforms.py
src/aind_mri_targeting/scripts/fit_implant.py
src/aind_mri_targeting/scripts/headframe_centers_of_mass.py
src/aind_mri_targeting/scripts/install_notebooks.py
tests/__init__.py
tests/test_example.py