.flake8
.gitignore
CONTRIBUTING.md
LICENSE
README.md
pyproject.toml
setup.py
.github/ISSUE_TEMPLATE/bug_report.md
.github/ISSUE_TEMPLATE/feature_request.md
.github/ISSUE_TEMPLATE/user-story.md
.github/workflows/tag_and_publish.yml
.github/workflows/test_and_lint.yml
doc_template/Makefile
doc_template/make.bat
doc_template/source/conf.py
doc_template/source/index.rst
doc_template/source/_static/dark-logo.svg
doc_template/source/_static/favicon.ico
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scripts/singularity_build.def
src/aind_metadata_mapper/__init__.py
src/aind_metadata_mapper/core.py
src/aind_metadata_mapper/gather_metadata.py
src/aind_metadata_mapper.egg-info/PKG-INFO
src/aind_metadata_mapper.egg-info/SOURCES.txt
src/aind_metadata_mapper.egg-info/dependency_links.txt
src/aind_metadata_mapper.egg-info/requires.txt
src/aind_metadata_mapper.egg-info/top_level.txt
src/aind_metadata_mapper/bergamo/__init__.py
src/aind_metadata_mapper/bergamo/session.py
src/aind_metadata_mapper/bruker/__init__.py
src/aind_metadata_mapper/bruker/session.py
src/aind_metadata_mapper/dynamic_routing/__init__.py
src/aind_metadata_mapper/dynamic_routing/mvr_rig.py
src/aind_metadata_mapper/dynamic_routing/neuropixels_rig.py
src/aind_metadata_mapper/dynamic_routing/sync_rig.py
src/aind_metadata_mapper/dynamic_routing/utils.py
src/aind_metadata_mapper/exaspim/__init__.py
src/aind_metadata_mapper/fip/__init__.py
src/aind_metadata_mapper/fip/session.py
src/aind_metadata_mapper/mesoscope/__init__.py
src/aind_metadata_mapper/mesoscope/session.py
src/aind_metadata_mapper/open_ephys/__init__.py
src/aind_metadata_mapper/open_ephys/camstim_ephys_session.py
src/aind_metadata_mapper/open_ephys/rig.py
src/aind_metadata_mapper/open_ephys/session.py
src/aind_metadata_mapper/open_ephys/utils/behavior_utils.py
src/aind_metadata_mapper/open_ephys/utils/constants.py
src/aind_metadata_mapper/open_ephys/utils/naming_utils.py
src/aind_metadata_mapper/open_ephys/utils/pkl_utils.py
src/aind_metadata_mapper/open_ephys/utils/stim_utils.py
src/aind_metadata_mapper/open_ephys/utils/sync_utils.py
src/aind_metadata_mapper/smartspim/__init__.py
src/aind_metadata_mapper/smartspim/acquisition.py
src/aind_metadata_mapper/smartspim/utils.py
src/aind_metadata_mapper/stimulus/__init__.py
src/aind_metadata_mapper/stimulus/camstim.py
tests/__init__.py
tests/test_gather_metadata.py
tests/test_legacy_core.py
tests/resources/bergamo/cropped_neuron50_00001.tif
tests/resources/bergamo/expected_session.json
tests/resources/bergamo/parsed_metadata.pkl.gz
tests/resources/bruker/example_scan_data.pkl
tests/resources/bruker/example_subject_data.pkl
tests/resources/bruker/expected_session.json
tests/resources/dynamic_routing/base-missing-probe_rig.json
tests/resources/dynamic_routing/base_rig.json
tests/resources/dynamic_routing/mvr.ini
tests/resources/dynamic_routing/mvr_rig.json
tests/resources/dynamic_routing/sync.yml
tests/resources/dynamic_routing/sync_rig.json
tests/resources/fip/000000_ophys_rig.json
tests/resources/fip/000000_ophys_session.json
tests/resources/fip/example_from_teensy.txt
tests/resources/gather_metadata_job/example_funding_multiple_response.json
tests/resources/gather_metadata_job/example_funding_response.json
tests/resources/gather_metadata_job/example_procedures_response.json
tests/resources/gather_metadata_job/example_subject_response.json
tests/resources/gather_metadata_job/metadata_files/acquisition.json
tests/resources/gather_metadata_job/metadata_files/data_description.json
tests/resources/gather_metadata_job/metadata_files/instrument.json
tests/resources/gather_metadata_job/metadata_files/procedures.json
tests/resources/gather_metadata_job/metadata_files/processing.json
tests/resources/gather_metadata_job/metadata_files/rig.json
tests/resources/gather_metadata_job/metadata_files/session.json
tests/resources/gather_metadata_job/metadata_files/subject.json
tests/resources/mesoscope/0123456789_Behavior_20240212T091443.json
tests/resources/mesoscope/0123456789_Eye_20240212T091443.json
tests/resources/mesoscope/0123456789_Face_20240212T091444.json
tests/resources/mesoscope/example_extract.json
tests/resources/mesoscope/example_platform.json
tests/resources/mesoscope/expected_session.json
tests/resources/open_ephys/camstim_ephys_session.json
tests/resources/open_ephys/ephys_session.json
tests/resources/open_ephys/newscale_main.csv
tests/resources/open_ephys/newscale_surface_finding.csv
tests/resources/open_ephys/open-ephys-inferred_rig.json
tests/resources/open_ephys/open-ephys_rig.json
tests/resources/open_ephys/settings.mislabeled-probes-0.xml
tests/resources/open_ephys/settings.mislabeled-probes-1.xml
tests/resources/open_ephys/settings.xml
tests/resources/open_ephys/settings_main.xml
tests/resources/open_ephys/settings_surface_finding.xml
tests/resources/smartspim/example_ASI_logging_afternoon.txt
tests/resources/smartspim/example_ASI_logging_morning.txt
tests/resources/smartspim/example_metadata.py
tests/resources/smartspim/local_json.json
tests/test_bergamo/__init__.py
tests/test_bergamo/test_session.py
tests/test_bruker/__init__.py
tests/test_bruker/test_session.py
tests/test_dynamic_routing/__init__.py
tests/test_dynamic_routing/test_mvr_rig.py
tests/test_dynamic_routing/test_neuropixels_rig.py
tests/test_dynamic_routing/test_sync_rig.py
tests/test_dynamic_routing/test_utils.py
tests/test_fip/__init__.py
tests/test_fip/test_session.py
tests/test_mesoscope/__init__.py
tests/test_mesoscope/test_session.py
tests/test_open_ephys/__init__.py
tests/test_open_ephys/test_rig.py
tests/test_open_ephys/test_session.py
tests/test_open_ephys/test_utils/test_behavior_utils.py
tests/test_open_ephys/test_utils/test_naming_utils.py
tests/test_open_ephys/test_utils/test_pkl_utils.py
tests/test_open_ephys/test_utils/test_stim_utils.py
tests/test_open_ephys/test_utils/test_sync_utils.py
tests/test_smartspim/__init__.py
tests/test_smartspim/test_acquisition.py
tests/test_smartspim/test_utils.py