.flake8
.gitignore
CHANGELOG.md
LICENSE
README.md
pyproject.toml
setup.py
.github/ISSUE_TEMPLATE/bug_report.md
.github/ISSUE_TEMPLATE/feature_request.md
.github/ISSUE_TEMPLATE/user-story.md
.github/workflows/lint_and_test.yml
.github/workflows/tag_and_publish.yml
capsule_scripts/imagej_postInstall
capsule_scripts/imagej_run.sh
capsule_scripts/n5tozarr_postInstall
capsule_scripts/n5tozarr_run.sh
doc/Makefile
doc/make.bat
doc/source/conf.py
doc/source/index.rst
doc/source/_static/dark-logo.svg
doc/source/_static/favicon.ico
doc/source/_static/light-logo.svg
src/aind_exaspim_pipeline_utils/__init__.py
src/aind_exaspim_pipeline_utils/exaspim_manifest.py
src/aind_exaspim_pipeline_utils/imagej_macros.py
src/aind_exaspim_pipeline_utils/imagej_wrapper.py
src/aind_exaspim_pipeline_utils/java_utils.py
src/aind_exaspim_pipeline_utils.egg-info/PKG-INFO
src/aind_exaspim_pipeline_utils.egg-info/SOURCES.txt
src/aind_exaspim_pipeline_utils.egg-info/dependency_links.txt
src/aind_exaspim_pipeline_utils.egg-info/entry_points.txt
src/aind_exaspim_pipeline_utils.egg-info/requires.txt
src/aind_exaspim_pipeline_utils.egg-info/top_level.txt
src/aind_exaspim_pipeline_utils/n5tozarr/__init__.py
src/aind_exaspim_pipeline_utils/n5tozarr/n5tozarr_da.py
src/aind_exaspim_pipeline_utils/qc/__init__.py
src/aind_exaspim_pipeline_utils/qc/affine_transformation.py
src/aind_exaspim_pipeline_utils/qc/bbox.py
src/aind_exaspim_pipeline_utils/qc/bigstitcher_log_edge_analysis.py
src/aind_exaspim_pipeline_utils/qc/create_ng_link.py
src/aind_exaspim_pipeline_utils/qc/image_cutout.py
src/aind_exaspim_pipeline_utils/qc/ip_density.py
src/aind_exaspim_pipeline_utils/qc/ng_ip_visualization.py
src/aind_exaspim_pipeline_utils/qc/tile_transformations.py
src/aind_exaspim_pipeline_utils/trigger/__init__.py
src/aind_exaspim_pipeline_utils/trigger/capsule.py
src/aind_trigger_codeocean/__init__.py
src/aind_trigger_codeocean/pipelines.py
tests/__init__.py
tests/test_affine_transformation.py
tests/test_capsule.py
tests/test_imagej_wrapper.py
tests/test_n5tozarr.py