LICENSE
README.md
pyproject.toml
release_version.txt
aiagents4pharma/__init__.py
aiagents4pharma.egg-info/PKG-INFO
aiagents4pharma.egg-info/SOURCES.txt
aiagents4pharma.egg-info/dependency_links.txt
aiagents4pharma.egg-info/requires.txt
aiagents4pharma.egg-info/top_level.txt
aiagents4pharma/talk2aiagents4pharma/__init__.py
aiagents4pharma/talk2aiagents4pharma/agents/__init__.py
aiagents4pharma/talk2aiagents4pharma/agents/main_agent.py
aiagents4pharma/talk2aiagents4pharma/configs/__init__.py
aiagents4pharma/talk2aiagents4pharma/configs/config.yaml
aiagents4pharma/talk2aiagents4pharma/configs/agents/__init__.py
aiagents4pharma/talk2aiagents4pharma/configs/agents/main_agent/default.yaml
aiagents4pharma/talk2aiagents4pharma/states/__init__.py
aiagents4pharma/talk2aiagents4pharma/states/state_talk2aiagents4pharma.py
aiagents4pharma/talk2aiagents4pharma/tests/__init__.py
aiagents4pharma/talk2aiagents4pharma/tests/test_main_agent.py
aiagents4pharma/talk2biomodels/__init__.py
aiagents4pharma/talk2biomodels/agents/__init__.py
aiagents4pharma/talk2biomodels/agents/t2b_agent.py
aiagents4pharma/talk2biomodels/api/__init__.py
aiagents4pharma/talk2biomodels/api/kegg.py
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aiagents4pharma/talk2biomodels/api/uniprot.py
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aiagents4pharma/talk2biomodels/configs/config.yaml
aiagents4pharma/talk2biomodels/configs/agents/__init__.py
aiagents4pharma/talk2biomodels/configs/agents/t2b_agent/__init__.py
aiagents4pharma/talk2biomodels/configs/agents/t2b_agent/default.yaml
aiagents4pharma/talk2biomodels/configs/tools/__init__.py
aiagents4pharma/talk2biomodels/configs/tools/ask_question/__init__.py
aiagents4pharma/talk2biomodels/configs/tools/ask_question/default.yaml
aiagents4pharma/talk2biomodels/configs/tools/custom_plotter/__init__.py
aiagents4pharma/talk2biomodels/configs/tools/custom_plotter/default.yaml
aiagents4pharma/talk2biomodels/configs/tools/get_annotation/__init__.py
aiagents4pharma/talk2biomodels/configs/tools/get_annotation/default.yaml
aiagents4pharma/talk2biomodels/models/__init__.py
aiagents4pharma/talk2biomodels/models/basico_model.py
aiagents4pharma/talk2biomodels/models/sys_bio_model.py
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aiagents4pharma/talk2biomodels/states/state_talk2biomodels.py
aiagents4pharma/talk2biomodels/tests/__init__.py
aiagents4pharma/talk2biomodels/tests/test_api.py
aiagents4pharma/talk2biomodels/tests/test_ask_question.py
aiagents4pharma/talk2biomodels/tests/test_basico_model.py
aiagents4pharma/talk2biomodels/tests/test_get_annotation.py
aiagents4pharma/talk2biomodels/tests/test_getmodelinfo.py
aiagents4pharma/talk2biomodels/tests/test_integration.py
aiagents4pharma/talk2biomodels/tests/test_load_biomodel.py
aiagents4pharma/talk2biomodels/tests/test_param_scan.py
aiagents4pharma/talk2biomodels/tests/test_query_article.py
aiagents4pharma/talk2biomodels/tests/test_search_models.py
aiagents4pharma/talk2biomodels/tests/test_simulate_model.py
aiagents4pharma/talk2biomodels/tests/test_steady_state.py
aiagents4pharma/talk2biomodels/tests/test_sys_bio_model.py
aiagents4pharma/talk2biomodels/tools/__init__.py
aiagents4pharma/talk2biomodels/tools/ask_question.py
aiagents4pharma/talk2biomodels/tools/custom_plotter.py
aiagents4pharma/talk2biomodels/tools/get_annotation.py
aiagents4pharma/talk2biomodels/tools/get_modelinfo.py
aiagents4pharma/talk2biomodels/tools/load_arguments.py
aiagents4pharma/talk2biomodels/tools/load_biomodel.py
aiagents4pharma/talk2biomodels/tools/parameter_scan.py
aiagents4pharma/talk2biomodels/tools/query_article.py
aiagents4pharma/talk2biomodels/tools/search_models.py
aiagents4pharma/talk2biomodels/tools/simulate_model.py
aiagents4pharma/talk2biomodels/tools/steady_state.py
aiagents4pharma/talk2biomodels/tools/utils.py
aiagents4pharma/talk2cells/__init__.py
aiagents4pharma/talk2cells/agents/__init__.py
aiagents4pharma/talk2cells/agents/scp_agent.py
aiagents4pharma/talk2cells/states/__init__.py
aiagents4pharma/talk2cells/states/state_talk2cells.py
aiagents4pharma/talk2cells/tests/scp_agent/test_scp_agent.py
aiagents4pharma/talk2cells/tools/__init__.py
aiagents4pharma/talk2cells/tools/scp_agent/__init__.py
aiagents4pharma/talk2cells/tools/scp_agent/display_studies.py
aiagents4pharma/talk2cells/tools/scp_agent/search_studies.py
aiagents4pharma/talk2knowledgegraphs/__init__.py
aiagents4pharma/talk2knowledgegraphs/agents/__init__.py
aiagents4pharma/talk2knowledgegraphs/agents/t2kg_agent.py
aiagents4pharma/talk2knowledgegraphs/configs/__init__.py
aiagents4pharma/talk2knowledgegraphs/configs/config.yaml
aiagents4pharma/talk2knowledgegraphs/configs/agents/t2kg_agent/__init__.py
aiagents4pharma/talk2knowledgegraphs/configs/agents/t2kg_agent/default.yaml
aiagents4pharma/talk2knowledgegraphs/configs/app/__init__.py
aiagents4pharma/talk2knowledgegraphs/configs/app/frontend/__init__.py
aiagents4pharma/talk2knowledgegraphs/configs/app/frontend/default.yaml
aiagents4pharma/talk2knowledgegraphs/configs/tools/__init__.py
aiagents4pharma/talk2knowledgegraphs/configs/tools/graphrag_reasoning/__init__.py
aiagents4pharma/talk2knowledgegraphs/configs/tools/graphrag_reasoning/default.yaml
aiagents4pharma/talk2knowledgegraphs/configs/tools/subgraph_extraction/__init__.py
aiagents4pharma/talk2knowledgegraphs/configs/tools/subgraph_extraction/default.yaml
aiagents4pharma/talk2knowledgegraphs/configs/tools/subgraph_summarization/__init__.py
aiagents4pharma/talk2knowledgegraphs/configs/tools/subgraph_summarization/default.yaml
aiagents4pharma/talk2knowledgegraphs/datasets/__init__.py
aiagents4pharma/talk2knowledgegraphs/datasets/biobridge_primekg.py
aiagents4pharma/talk2knowledgegraphs/datasets/dataset.py
aiagents4pharma/talk2knowledgegraphs/datasets/primekg.py
aiagents4pharma/talk2knowledgegraphs/datasets/starkqa_primekg.py
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aiagents4pharma/talk2knowledgegraphs/tests/test_datasets_dataset.py
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aiagents4pharma/talk2knowledgegraphs/tests/test_datasets_starkqa_primekg.py
aiagents4pharma/talk2knowledgegraphs/tests/test_tools_graphrag_reasoning.py
aiagents4pharma/talk2knowledgegraphs/tests/test_tools_subgraph_extraction.py
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aiagents4pharma/talk2knowledgegraphs/tests/test_utils_embeddings_nim_molmim.py
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aiagents4pharma/talk2knowledgegraphs/tests/test_utils_embeddings_sentencetransformer.py
aiagents4pharma/talk2knowledgegraphs/tests/test_utils_enrichments_enrichments.py
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aiagents4pharma/talk2knowledgegraphs/tests/test_utils_enrichments_pubchem.py
aiagents4pharma/talk2knowledgegraphs/tests/test_utils_kg_utils.py
aiagents4pharma/talk2knowledgegraphs/tests/test_utils_pubchem_utils.py
aiagents4pharma/talk2knowledgegraphs/tools/__init__.py
aiagents4pharma/talk2knowledgegraphs/tools/graphrag_reasoning.py
aiagents4pharma/talk2knowledgegraphs/tools/load_arguments.py
aiagents4pharma/talk2knowledgegraphs/tools/subgraph_extraction.py
aiagents4pharma/talk2knowledgegraphs/tools/subgraph_summarization.py
aiagents4pharma/talk2knowledgegraphs/utils/__init__.py
aiagents4pharma/talk2knowledgegraphs/utils/kg_utils.py
aiagents4pharma/talk2knowledgegraphs/utils/pubchem_utils.py
aiagents4pharma/talk2knowledgegraphs/utils/embeddings/__init__.py
aiagents4pharma/talk2knowledgegraphs/utils/embeddings/embeddings.py
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aiagents4pharma/talk2knowledgegraphs/utils/embeddings/ollama.py
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aiagents4pharma/talk2knowledgegraphs/utils/enrichments/__init__.py
aiagents4pharma/talk2knowledgegraphs/utils/enrichments/enrichments.py
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aiagents4pharma/talk2knowledgegraphs/utils/extractions/__init__.py
aiagents4pharma/talk2knowledgegraphs/utils/extractions/pcst.py
aiagents4pharma/talk2scholars/__init__.py
aiagents4pharma/talk2scholars/agents/__init__.py
aiagents4pharma/talk2scholars/agents/main_agent.py
aiagents4pharma/talk2scholars/agents/s2_agent.py
aiagents4pharma/talk2scholars/agents/zotero_agent.py
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aiagents4pharma/talk2scholars/configs/config.yaml
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aiagents4pharma/talk2scholars/configs/agents/talk2scholars/main_agent/__init__.py
aiagents4pharma/talk2scholars/configs/agents/talk2scholars/main_agent/default.yaml
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aiagents4pharma/talk2scholars/configs/agents/talk2scholars/s2_agent/default.yaml
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aiagents4pharma/talk2scholars/configs/agents/talk2scholars/zotero_agent/default.yaml
aiagents4pharma/talk2scholars/configs/app/__init__.py
aiagents4pharma/talk2scholars/configs/app/frontend/__init__.py
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aiagents4pharma/talk2scholars/configs/tools/__init__.py
aiagents4pharma/talk2scholars/configs/tools/multi_paper_recommendation/__init__.py
aiagents4pharma/talk2scholars/configs/tools/multi_paper_recommendation/default.yaml
aiagents4pharma/talk2scholars/configs/tools/retrieve_semantic_scholar_paper_id/__init__.py
aiagents4pharma/talk2scholars/configs/tools/retrieve_semantic_scholar_paper_id/default.yaml
aiagents4pharma/talk2scholars/configs/tools/search/__init__.py
aiagents4pharma/talk2scholars/configs/tools/search/default.yaml
aiagents4pharma/talk2scholars/configs/tools/single_paper_recommendation/__init__.py
aiagents4pharma/talk2scholars/configs/tools/single_paper_recommendation/default.yaml
aiagents4pharma/talk2scholars/configs/tools/zotero_read/__init__.py
aiagents4pharma/talk2scholars/configs/tools/zotero_read/default.yaml
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aiagents4pharma/talk2scholars/tests/test_zotero_agent.py
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aiagents4pharma/talk2scholars/tools/__init__.py
aiagents4pharma/talk2scholars/tools/s2/__init__.py
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aiagents4pharma/talk2scholars/tools/s2/search.py
aiagents4pharma/talk2scholars/tools/s2/single_paper_rec.py
aiagents4pharma/talk2scholars/tools/zotero/__init__.py
aiagents4pharma/talk2scholars/tools/zotero/zotero_read.py