# Changelog

## 0.1.0

### Added
- Deterministic, artifact-first execution engine with explicit run directories and state snapshots.
- Agent-based architecture covering planning, analysis, execution, verification, and reporting.
- End-to-end design loop with failure handling, stagnation detection, and human-in-the-loop gating.
- CLI for running, resuming, inspecting, comparing, and exporting protein design runs.
- Local and remote provider abstractions with explicit capability and requirement checks.
- Structured reporting system with machine-readable artifacts and human-readable summaries.
- Integrated evaluation pipeline supporting structure-based metrics and ground-truth comparison.
- Reproducibility controls, observability hooks, and execution telemetry.
- Example datasets and reference runs for local experimentation and validation.
- Comprehensive test suite covering unit, integration, regression, and execution boundaries.
