# Workspace Organization Guide

## 📁 Current File Structure

### Root Directory (Clean!)
```
agent_mem/                  # Main package source code
├── agents/                 # Pydantic AI agents
├── config/                 # Configuration management
├── database/               # Database managers & repositories
├── services/               # Core services (embedding, memory_manager)
└── utils/                  # Helper utilities

docs/                       # Documentation
├── archive/                # Historical/temporary docs (moved from root)
│   ├── TEST_*.md          # Test status reports
│   ├── PHASE5_*.md        # Phase 5 status docs
│   └── ...                # Other temporary status files
└── ref/                   # Reference documentation

examples/                   # Example scripts
tests/                      # Test suite
htmlcov/                    # Coverage reports (generated)

# Configuration Files
docker-compose.yml          # Docker services setup
pyproject.toml              # Package configuration
pytest.ini                  # Pytest configuration
requirements-test.txt       # Test dependencies

# Documentation Files  
README.md                   # Main project documentation
QUICKSTART.md              # Quick start guide
TEST_PROGRESS_UPDATE.md    # Latest test progress (this session)
```

## 📋 File Categories

### 1. Essential Root Files (Keep)
- ✅ `README.md` - Main documentation
- ✅ `QUICKSTART.md` - Getting started guide
- ✅ `pyproject.toml` - Package configuration
- ✅ `pytest.ini` - Test configuration
- ✅ `docker-compose.yml` - Docker services
- ✅ `requirements-test.txt` - Test dependencies
- ✅ `TEST_PROGRESS_UPDATE.md` - Current status (new)

### 2. Archived Files (Moved to docs/archive/)
- ✅ `TEST_SUITE_REWRITE_NEEDED.md` - Archived
- ✅ `TEST_STATUS_FINAL.md` - Archived
- ✅ `TEST_FIX_STATUS.md` - Archived
- ✅ `TEST_FIX_SESSION_SUMMARY.md` - Archived
- ✅ `TEST_FIXES_NEEDED.md` - Archived
- ✅ `PHASE5_ENV_SUMMARY.md` - Archived
- ✅ `CONFIGURATION_COMPLETE.md` - Archived
- ✅ `PROJECT_STATUS_SUMMARY.md` - Archived
- ✅ `SETUP_STATUS.md` - Archived
- ✅ `QUICK_TEST_FIXES.md` - Archived

### 3. Generated Files (Git ignored)
- `htmlcov/` - Coverage HTML reports
- `coverage.xml` - Coverage XML report
- `agent_mem.egg-info/` - Package metadata
- `.pytest_cache/` - Pytest cache
- `__pycache__/` - Python bytecode

## 📚 Documentation Structure

### Primary Docs (docs/)
- `ARCHITECTURE.md` - System architecture
- `DEVELOPMENT.md` - Development guide
- `GETTING_STARTED.md` - Setup instructions
- `IMPLEMENTATION_STATUS.md` - Implementation tracking
- `STRUCTURE.md` - Package structure
- `INDEX.md` - Documentation index

### Reference Docs (docs/ref/)
- `agent-creation-guide.md` - How to create agents
- `er-extractor-agent.md` - ER extractor details
- `memory-agents.md` - Agent system overview
- `memory-architecture.md` - Memory system design
- `neo4j-entities-relationships.md` - Graph database schema

### Archive (docs/archive/)
- Historical status reports
- Temporary planning documents
- Session summaries from previous work

## 🧪 Test Files

### Unit Tests
- ✅ `test_config.py` - Configuration tests (6 tests)
- ✅ `test_models.py` - Data model tests (26 tests)
- `test_postgres_manager.py` - PostgreSQL tests
- `test_neo4j_manager.py` - Neo4j tests
- `test_embedding_service.py` - Embedding tests
- `test_core.py` - Core API tests
- `test_active_memory_repository.py` - Active memory tests
- `test_shortterm_memory_repository.py` - Shortterm tests
- `test_longterm_memory_repository.py` - Longterm tests
- `test_memory_manager.py` - Memory manager tests

### Integration Tests
- `test_integration.py` - End-to-end tests
- `test_agents.py` - Agent integration tests

### Test Infrastructure
- `conftest.py` - Pytest fixtures
- `README.md` - Test documentation
- `__init__.py` - Test package init

## 🗑️ Deleted Files
- ❌ `tests/*.backup` - Backup files removed

## 📊 File Count Summary

```
Root directory:     7 essential files (down from 17!)
docs/:              10 main docs
docs/archive/:      15+ archived files
docs/ref/:          5 reference docs
tests/:             15 test files
agent_mem/:         40+ source files
```

## 💡 File Organization Principles

### ✅ DO Keep in Root:
- Essential configuration (pyproject.toml, pytest.ini, docker-compose.yml)
- Primary documentation (README.md, QUICKSTART.md)
- Current status/progress documents
- Dependency files (requirements-test.txt)

### ✅ DO Move to docs/:
- Detailed documentation (ARCHITECTURE.md, DEVELOPMENT.md)
- Implementation tracking (IMPLEMENTATION_STATUS.md)
- Reference materials (docs/ref/)

### ✅ DO Move to docs/archive/:
- Historical status reports
- Completed phase summaries
- Temporary planning documents
- Session summaries from completed work

### ❌ DON'T Keep:
- Backup files (.backup, .old, .bak)
- Duplicate documents
- Temporary test files
- Editor temp files

## 🎯 Benefits of Current Organization

1. **Clean Root**: Easy to find essential files
2. **Organized Docs**: Documentation in dedicated directory
3. **Historical Context**: Archive preserves work history
4. **Clear Purpose**: Each file has clear location based on purpose
5. **Git Friendly**: .gitignore handles generated files
6. **Developer Friendly**: New contributors can navigate easily

## 🔄 Maintenance

### When to Archive:
- Status reports when project phase completes
- Planning documents when implementation finishes
- Session summaries when work is integrated
- Temporary troubleshooting documents

### When to Update:
- README.md: When major features added
- IMPLEMENTATION_STATUS.md: After completing tasks
- TEST_PROGRESS_UPDATE.md: After test sessions
- QUICKSTART.md: When setup process changes

### When to Delete:
- Backup files immediately
- Generated reports when outdated
- Duplicate documents
- Obsolete configuration files

## 📝 Current Status

✅ **Workspace Cleaned**: Root directory organized  
✅ **Tests Created**: 2/15 test files complete  
✅ **Documentation**: Well organized in docs/  
✅ **Archives**: Historical files preserved  

**Next**: Continue test implementation with clean workspace!
