AUTHORS
INSTALL.md
LICENSE
MANIFEST.in
NEWS
README.md
TUTORIAL.md
setup.py
agalma/__init__.py
agalma/agalma_report.py
agalma/annotate.py
agalma/assemble.py
agalma/config.py
agalma/database.py
agalma/expression.py
agalma/genetree.py
agalma/homologize.py
agalma/import.py
agalma/insert_size.py
agalma/multalign.py
agalma/qc.py
agalma/rrna.py
agalma/speciestree.py
agalma/supermatrix.py
agalma/transcriptome.py
agalma/translate.py
agalma/treeinform.py
agalma/treeprune.py
agalma.egg-info/PKG-INFO
agalma.egg-info/SOURCES.txt
agalma.egg-info/dependency_links.txt
agalma.egg-info/requires.txt
agalma.egg-info/top_level.txt
agalma/config/agalma.cfg
agalma/data/rRNA-angiosperm.fasta
agalma/data/rRNA-animal.fasta
scripts/agalma
scripts/agalma-export
scripts/agalma-export-expression
scripts/agalma-matrix2genes
scripts/agalma-phylogeny-report
scripts/agalma-report
scripts/agalma-resources
scripts/agalma-tabular-report
scripts/agalma-test-expression
scripts/agalma-test-phylogeny
scripts/agalma-test-transcriptome
scripts/agalma-test-tutorial
scripts/stub.agalma-test-tutorial