.gitignore
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LICENSE
MANIFEST.in
README.md
app.py
requirements.txt
setup.py
afusion/__init__.py
afusion/api.py
afusion/app.py
afusion/bonds.py
afusion/cli.py
afusion/execution.py
afusion/install.py
afusion/sequence_input.py
afusion/utils.py
afusion/visualization.py
afusion.egg-info/PKG-INFO
afusion.egg-info/SOURCES.txt
afusion.egg-info/dependency_links.txt
afusion.egg-info/entry_points.txt
afusion.egg-info/requires.txt
afusion.egg-info/top_level.txt
afusion/__pycache__/__init__.cpython-310.pyc
afusion/__pycache__/cli.cpython-310.pyc
docs/Makefile
docs/make.bat
docs/requirements.txt
docs/source/.conf.py.swp
docs/source/api.md
docs/source/conf.py
docs/source/index.md
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docs/source/installation.md
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docs/source/tutorial.md