LICENSE.md
README.md
pyproject.toml
aegis/__init__.py
aegis/__main__.py
aegis/annotation.py
aegis/conf.py
aegis/equivalence.py
aegis/feature.py
aegis/gene.py
aegis/genome.py
aegis/hits.py
aegis/misc_features.py
aegis/subfeatures.py
aegis/transcript.py
aegis/annotation_components/__init__.py
aegis/annotation_components/export.py
aegis/annotation_components/motifs.py
aegis/annotation_components/overlaps.py
aegis/annotation_components/redundancy.py
aegis/annotation_components/stats.py
aegis/cli/__init__.py
aegis/cli/__main__.py
aegis/cli/extract.py
aegis/cli/list.py
aegis/cli/merge.py
aegis/cli/motif_search.py
aegis/cli/orthology.py
aegis/cli/overlap.py
aegis/cli/prune.py
aegis/cli/reformat.py
aegis/cli/rename.py
aegis/cli/subset.py
aegis/cli/summary.py
aegis/cli/symbols.py
aegis/cli/tidy.py
aegis/cli/tidy_genome.py
aegis/utils/__init__.py
aegis/utils/evalue.py
aegis/utils/genefunctions.py
aegis/utils/gtf_gff.py
aegis/utils/misc.py
aegis/utils/plots.py
aegis_bio.egg-info/PKG-INFO
aegis_bio.egg-info/SOURCES.txt
aegis_bio.egg-info/dependency_links.txt
aegis_bio.egg-info/entry_points.txt
aegis_bio.egg-info/requires.txt
aegis_bio.egg-info/top_level.txt
tests/test_annotation.py
tests/test_cli_extract.py
tests/test_equivalence.py
tests/test_feature.py
tests/test_gene.py
tests/test_genome.py
tests/test_hits.py
tests/test_logic.py
tests/test_misc.py
tests/test_misc_features.py
tests/test_subfeatures.py
tests/test_transcript.py