LICENSE
MANIFEST.in
README.md
pyproject.toml
setup.py
adelie/__init__.py
adelie/bcd.py
adelie/configs.py
adelie/constraint.py
adelie/cv.py
adelie/data.py
adelie/diagnostic.py
adelie/glm.py
adelie/io.py
adelie/logger.py
adelie/matrix.py
adelie/optimization.py
adelie/solver.py
adelie/state.py
adelie.egg-info/PKG-INFO
adelie.egg-info/SOURCES.txt
adelie.egg-info/dependency_links.txt
adelie.egg-info/not-zip-safe
adelie.egg-info/requires.txt
adelie.egg-info/top_level.txt
adelie/src/adelie_core.cpp
adelie/src/bcd.cpp
adelie/src/configs.cpp
adelie/src/constraint.cpp
adelie/src/decl.hpp
adelie/src/glm.cpp
adelie/src/io.cpp
adelie/src/matrix.cpp
adelie/src/matrix_utils.cpp
adelie/src/matrx_utils_blas.cpp
adelie/src/optimization.cpp
adelie/src/solver.cpp
adelie/src/state.cpp
adelie/src/include/adelie_core/configs.hpp
adelie/src/include/adelie_core/bcd/utils.hpp
adelie/src/include/adelie_core/bcd/constrained/admm.hpp
adelie/src/include/adelie_core/bcd/constrained/coordinate_descent.hpp
adelie/src/include/adelie_core/bcd/constrained/proximal_newton.hpp
adelie/src/include/adelie_core/bcd/unconstrained/brent.hpp
adelie/src/include/adelie_core/bcd/unconstrained/ista.hpp
adelie/src/include/adelie_core/bcd/unconstrained/newton.hpp
adelie/src/include/adelie_core/constraint/constraint_base.hpp
adelie/src/include/adelie_core/constraint/constraint_lower_upper.hpp
adelie/src/include/adelie_core/glm/glm_base.hpp
adelie/src/include/adelie_core/glm/glm_binomial.hpp
adelie/src/include/adelie_core/glm/glm_cox.hpp
adelie/src/include/adelie_core/glm/glm_gaussian.hpp
adelie/src/include/adelie_core/glm/glm_multibase.hpp
adelie/src/include/adelie_core/glm/glm_multigaussian.hpp
adelie/src/include/adelie_core/glm/glm_multinomial.hpp
adelie/src/include/adelie_core/glm/glm_poisson.hpp
adelie/src/include/adelie_core/io/io_snp_base.hpp
adelie/src/include/adelie_core/io/io_snp_phased_ancestry.hpp
adelie/src/include/adelie_core/io/io_snp_unphased.hpp
adelie/src/include/adelie_core/io/utils.hpp
adelie/src/include/adelie_core/matrix/matrix_cov_base.hpp
adelie/src/include/adelie_core/matrix/matrix_cov_block_diag.hpp
adelie/src/include/adelie_core/matrix/matrix_cov_dense.hpp
adelie/src/include/adelie_core/matrix/matrix_cov_lazy_cov.hpp
adelie/src/include/adelie_core/matrix/matrix_cov_sparse.hpp
adelie/src/include/adelie_core/matrix/matrix_naive_base.hpp
adelie/src/include/adelie_core/matrix/matrix_naive_concatenate.hpp
adelie/src/include/adelie_core/matrix/matrix_naive_dense.hpp
adelie/src/include/adelie_core/matrix/matrix_naive_interaction.hpp
adelie/src/include/adelie_core/matrix/matrix_naive_kronecker_eye.hpp
adelie/src/include/adelie_core/matrix/matrix_naive_one_hot.hpp
adelie/src/include/adelie_core/matrix/matrix_naive_snp_phased_ancestry.hpp
adelie/src/include/adelie_core/matrix/matrix_naive_snp_unphased.hpp
adelie/src/include/adelie_core/matrix/matrix_naive_sparse.hpp
adelie/src/include/adelie_core/matrix/matrix_naive_standardize.hpp
adelie/src/include/adelie_core/matrix/matrix_naive_subset.hpp
adelie/src/include/adelie_core/matrix/utils.hpp
adelie/src/include/adelie_core/optimization/bisect.hpp
adelie/src/include/adelie_core/optimization/newton.hpp
adelie/src/include/adelie_core/optimization/nnls.hpp
adelie/src/include/adelie_core/optimization/nnqp_full.hpp
adelie/src/include/adelie_core/optimization/nnqp_low_rank.hpp
adelie/src/include/adelie_core/optimization/search_pivot.hpp
adelie/src/include/adelie_core/optimization/symmetric_penalty.hpp
adelie/src/include/adelie_core/solver/solver_base.hpp
adelie/src/include/adelie_core/solver/solver_gaussian_cov.hpp
adelie/src/include/adelie_core/solver/solver_gaussian_naive.hpp
adelie/src/include/adelie_core/solver/solver_gaussian_pin_base.hpp
adelie/src/include/adelie_core/solver/solver_gaussian_pin_cov.hpp
adelie/src/include/adelie_core/solver/solver_gaussian_pin_naive.hpp
adelie/src/include/adelie_core/solver/solver_glm_naive.hpp
adelie/src/include/adelie_core/solver/solver_multigaussian_naive.hpp
adelie/src/include/adelie_core/solver/solver_multiglm_naive.hpp
adelie/src/include/adelie_core/solver/utils.hpp
adelie/src/include/adelie_core/state/state_base.hpp
adelie/src/include/adelie_core/state/state_gaussian_cov.hpp
adelie/src/include/adelie_core/state/state_gaussian_naive.hpp
adelie/src/include/adelie_core/state/state_gaussian_pin_base.hpp
adelie/src/include/adelie_core/state/state_gaussian_pin_cov.hpp
adelie/src/include/adelie_core/state/state_gaussian_pin_naive.hpp
adelie/src/include/adelie_core/state/state_glm_naive.hpp
adelie/src/include/adelie_core/state/state_multigaussian_naive.hpp
adelie/src/include/adelie_core/state/state_multiglm_naive.hpp
adelie/src/include/adelie_core/util/algorithm.hpp
adelie/src/include/adelie_core/util/counting_iterator.hpp
adelie/src/include/adelie_core/util/exceptions.hpp
adelie/src/include/adelie_core/util/format.hpp
adelie/src/include/adelie_core/util/functional.hpp
adelie/src/include/adelie_core/util/macros.hpp
adelie/src/include/adelie_core/util/queue.hpp
adelie/src/include/adelie_core/util/stopwatch.hpp
adelie/src/include/adelie_core/util/tqdm.hpp
adelie/src/include/adelie_core/util/types.hpp
adelie/src/include/adelie_core/util/eigen/map_sparsevector.hpp