from .util import messageSend, knowledgeSearch, completionCreate, runCmd, execCmd, CmdResult
from .tool import Tool
from .tool_types import (
    FileType, ToolFile, ToolOutput,
    tool_io, extract_file_type, get_tool_contract,
    PDBFile, SDFFile, FASTAFile, CSVFile, MOL2File,
    XYZFile, JSONFile, PNGFile, NPYFile, A3MFile, CIFFile, PQRFile, TXTFile,
)
from .cli.parser import parse_python_file, parse_directory, convert_python_type_to_json_schema
from .__version__ import __version__

__all__ = [
    'Tool',
    'messageSend',
    'knowledgeSearch',
    'completionCreate',
    'runCmd',
    'execCmd',
    'CmdResult',
    'parse_python_file',
    'parse_directory',
    'convert_python_type_to_json_schema',
    # Tool I/O Type System
    'FileType', 'ToolFile', 'ToolOutput',
    'tool_io', 'extract_file_type', 'get_tool_contract',
    'PDBFile', 'SDFFile', 'FASTAFile', 'CSVFile', 'MOL2File',
    'XYZFile', 'JSONFile', 'PNGFile', 'NPYFile', 'A3MFile', 'CIFFile', 'PQRFile', 'TXTFile',
]
