__version__ = '0.6.0'

from .fasta import (
    import_from_fasta,
    get_tokens,
    write_fasta,
    encode_sequence,
    decode_sequence,
)
from .stats import (
    get_freq_single_point,
    get_freq_two_points,
    get_freq_three_points,
    get_correlation_two_points,
)
from .io import (
    load_params,
    save_params,
)
from .sampling import (
    get_sampler,
    gibbs_sampling,
    metropolis_sampling,
    gibbs_step_independent_sites,
    gibbs_step_uniform_sites,
    metropolis_step_uniform_sites,
    metropolis_step_independent_sites,
)
from .functional import one_hot
from .statmech import compute_energy
from .dca import (
    get_seqid,
    get_seqid_stats,
    get_contact_map,
    get_mf_contact_map,
)

__all__ = [
    "import_from_fasta",
    "get_tokens",
    "write_fasta",
    "encode_sequence",
    "decode_sequence",
    "get_freq_single_point",
    "get_freq_two_points",
    "get_freq_three_points",
    "get_correlation_two_points",
    "load_params",
    "save_params",
    "get_sampler",
    "gibbs_sampling",
    "metropolis_sampling",
    "gibbs_step_independent_sites",
    "metropolis_step_independent_sites",
    "gibbs_step_uniform_sites",
    "metropolis_step_uniform_sites",
    "one_hot",
    "compute_energy",
    "get_seqid",
    "get_seqid_stats",
    "get_contact_map",
    "get_mf_contact_map",
]