LICENSE
MANIFEST.in
README.md
requirements.txt
setup.cfg
setup.py
abstar/__init__.py
abstar/gl.py
abstar/pp.py
abstar/tl.py
abstar/version.py
abstar.egg-info/PKG-INFO
abstar.egg-info/SOURCES.txt
abstar.egg-info/dependency_links.txt
abstar.egg-info/entry_points.txt
abstar.egg-info/requires.txt
abstar.egg-info/top_level.txt
abstar/annotation/__init__.py
abstar/annotation/annotator.py
abstar/annotation/antibody.py
abstar/annotation/germline.py
abstar/annotation/indels.py
abstar/annotation/mutations.py
abstar/annotation/positions.py
abstar/annotation/productivity.py
abstar/annotation/regions.py
abstar/annotation/schema.py
abstar/annotation/umi.py
abstar/assigners/__init__.py
abstar/assigners/assigner.py
abstar/assigners/blastn.py
abstar/assigners/mmseqs.py
abstar/core/__init__.py
abstar/core/abstar.py
abstar/core/germline.py
abstar/germline_dbs/bcr/balbc/manifest.txt
abstar/germline_dbs/bcr/balbc/imgt_gapped/c.fasta
abstar/germline_dbs/bcr/balbc/imgt_gapped/d.fasta
abstar/germline_dbs/bcr/balbc/imgt_gapped/j.fasta
abstar/germline_dbs/bcr/balbc/imgt_gapped/v.fasta
abstar/germline_dbs/bcr/balbc/mmseqs/c
abstar/germline_dbs/bcr/balbc/mmseqs/c.dbtype
abstar/germline_dbs/bcr/balbc/mmseqs/c.index
abstar/germline_dbs/bcr/balbc/mmseqs/c.lookup
abstar/germline_dbs/bcr/balbc/mmseqs/c.source
abstar/germline_dbs/bcr/balbc/mmseqs/c_h
abstar/germline_dbs/bcr/balbc/mmseqs/c_h.dbtype
abstar/germline_dbs/bcr/balbc/mmseqs/c_h.index
abstar/germline_dbs/bcr/balbc/mmseqs/d
abstar/germline_dbs/bcr/balbc/mmseqs/d.dbtype
abstar/germline_dbs/bcr/balbc/mmseqs/d.index
abstar/germline_dbs/bcr/balbc/mmseqs/d.lookup
abstar/germline_dbs/bcr/balbc/mmseqs/d.source
abstar/germline_dbs/bcr/balbc/mmseqs/d_h
abstar/germline_dbs/bcr/balbc/mmseqs/d_h.dbtype
abstar/germline_dbs/bcr/balbc/mmseqs/d_h.index
abstar/germline_dbs/bcr/balbc/mmseqs/j
abstar/germline_dbs/bcr/balbc/mmseqs/j.dbtype
abstar/germline_dbs/bcr/balbc/mmseqs/j.index
abstar/germline_dbs/bcr/balbc/mmseqs/j.lookup
abstar/germline_dbs/bcr/balbc/mmseqs/j.source
abstar/germline_dbs/bcr/balbc/mmseqs/j_h
abstar/germline_dbs/bcr/balbc/mmseqs/j_h.dbtype
abstar/germline_dbs/bcr/balbc/mmseqs/j_h.index
abstar/germline_dbs/bcr/balbc/mmseqs/v
abstar/germline_dbs/bcr/balbc/mmseqs/v.dbtype
abstar/germline_dbs/bcr/balbc/mmseqs/v.index
abstar/germline_dbs/bcr/balbc/mmseqs/v.lookup
abstar/germline_dbs/bcr/balbc/mmseqs/v.source
abstar/germline_dbs/bcr/balbc/mmseqs/v_h
abstar/germline_dbs/bcr/balbc/mmseqs/v_h.dbtype
abstar/germline_dbs/bcr/balbc/mmseqs/v_h.index
abstar/germline_dbs/bcr/balbc/ungapped/c.fasta
abstar/germline_dbs/bcr/balbc/ungapped/d.fasta
abstar/germline_dbs/bcr/balbc/ungapped/j.fasta
abstar/germline_dbs/bcr/balbc/ungapped/v.fasta
abstar/germline_dbs/bcr/c57bl6/manifest.txt
abstar/germline_dbs/bcr/c57bl6/imgt_gapped/c.fasta
abstar/germline_dbs/bcr/c57bl6/imgt_gapped/d.fasta
abstar/germline_dbs/bcr/c57bl6/imgt_gapped/j.fasta
abstar/germline_dbs/bcr/c57bl6/imgt_gapped/v.fasta
abstar/germline_dbs/bcr/c57bl6/mmseqs/c
abstar/germline_dbs/bcr/c57bl6/mmseqs/c.dbtype
abstar/germline_dbs/bcr/c57bl6/mmseqs/c.index
abstar/germline_dbs/bcr/c57bl6/mmseqs/c.lookup
abstar/germline_dbs/bcr/c57bl6/mmseqs/c.source
abstar/germline_dbs/bcr/c57bl6/mmseqs/c_h
abstar/germline_dbs/bcr/c57bl6/mmseqs/c_h.dbtype
abstar/germline_dbs/bcr/c57bl6/mmseqs/c_h.index
abstar/germline_dbs/bcr/c57bl6/mmseqs/d
abstar/germline_dbs/bcr/c57bl6/mmseqs/d.dbtype
abstar/germline_dbs/bcr/c57bl6/mmseqs/d.index
abstar/germline_dbs/bcr/c57bl6/mmseqs/d.lookup
abstar/germline_dbs/bcr/c57bl6/mmseqs/d.source
abstar/germline_dbs/bcr/c57bl6/mmseqs/d_h
abstar/germline_dbs/bcr/c57bl6/mmseqs/d_h.dbtype
abstar/germline_dbs/bcr/c57bl6/mmseqs/d_h.index
abstar/germline_dbs/bcr/c57bl6/mmseqs/j
abstar/germline_dbs/bcr/c57bl6/mmseqs/j.dbtype
abstar/germline_dbs/bcr/c57bl6/mmseqs/j.index
abstar/germline_dbs/bcr/c57bl6/mmseqs/j.lookup
abstar/germline_dbs/bcr/c57bl6/mmseqs/j.source
abstar/germline_dbs/bcr/c57bl6/mmseqs/j_h
abstar/germline_dbs/bcr/c57bl6/mmseqs/j_h.dbtype
abstar/germline_dbs/bcr/c57bl6/mmseqs/j_h.index
abstar/germline_dbs/bcr/c57bl6/mmseqs/v
abstar/germline_dbs/bcr/c57bl6/mmseqs/v.dbtype
abstar/germline_dbs/bcr/c57bl6/mmseqs/v.index
abstar/germline_dbs/bcr/c57bl6/mmseqs/v.lookup
abstar/germline_dbs/bcr/c57bl6/mmseqs/v.source
abstar/germline_dbs/bcr/c57bl6/mmseqs/v_h
abstar/germline_dbs/bcr/c57bl6/mmseqs/v_h.dbtype
abstar/germline_dbs/bcr/c57bl6/mmseqs/v_h.index
abstar/germline_dbs/bcr/c57bl6/ungapped/c.fasta
abstar/germline_dbs/bcr/c57bl6/ungapped/d.fasta
abstar/germline_dbs/bcr/c57bl6/ungapped/j.fasta
abstar/germline_dbs/bcr/c57bl6/ungapped/v.fasta
abstar/germline_dbs/bcr/human/manifest.txt
abstar/germline_dbs/bcr/human/imgt_gapped/c.fasta
abstar/germline_dbs/bcr/human/imgt_gapped/d.fasta
abstar/germline_dbs/bcr/human/imgt_gapped/j.fasta
abstar/germline_dbs/bcr/human/imgt_gapped/v.fasta
abstar/germline_dbs/bcr/human/mmseqs/c
abstar/germline_dbs/bcr/human/mmseqs/c.dbtype
abstar/germline_dbs/bcr/human/mmseqs/c.index
abstar/germline_dbs/bcr/human/mmseqs/c.lookup
abstar/germline_dbs/bcr/human/mmseqs/c.source
abstar/germline_dbs/bcr/human/mmseqs/c_h
abstar/germline_dbs/bcr/human/mmseqs/c_h.dbtype
abstar/germline_dbs/bcr/human/mmseqs/c_h.index
abstar/germline_dbs/bcr/human/mmseqs/d
abstar/germline_dbs/bcr/human/mmseqs/d.dbtype
abstar/germline_dbs/bcr/human/mmseqs/d.index
abstar/germline_dbs/bcr/human/mmseqs/d.lookup
abstar/germline_dbs/bcr/human/mmseqs/d.source
abstar/germline_dbs/bcr/human/mmseqs/d_h
abstar/germline_dbs/bcr/human/mmseqs/d_h.dbtype
abstar/germline_dbs/bcr/human/mmseqs/d_h.index
abstar/germline_dbs/bcr/human/mmseqs/j
abstar/germline_dbs/bcr/human/mmseqs/j.dbtype
abstar/germline_dbs/bcr/human/mmseqs/j.index
abstar/germline_dbs/bcr/human/mmseqs/j.lookup
abstar/germline_dbs/bcr/human/mmseqs/j.source
abstar/germline_dbs/bcr/human/mmseqs/j_h
abstar/germline_dbs/bcr/human/mmseqs/j_h.dbtype
abstar/germline_dbs/bcr/human/mmseqs/j_h.index
abstar/germline_dbs/bcr/human/mmseqs/v
abstar/germline_dbs/bcr/human/mmseqs/v.dbtype
abstar/germline_dbs/bcr/human/mmseqs/v.index
abstar/germline_dbs/bcr/human/mmseqs/v.lookup
abstar/germline_dbs/bcr/human/mmseqs/v.source
abstar/germline_dbs/bcr/human/mmseqs/v_h
abstar/germline_dbs/bcr/human/mmseqs/v_h.dbtype
abstar/germline_dbs/bcr/human/mmseqs/v_h.index
abstar/germline_dbs/bcr/human/ungapped/c.fasta
abstar/germline_dbs/bcr/human/ungapped/d.fasta
abstar/germline_dbs/bcr/human/ungapped/j.fasta
abstar/germline_dbs/bcr/human/ungapped/v.fasta
abstar/germline_dbs/bcr/macaque/manifest.txt
abstar/germline_dbs/bcr/macaque/imgt_gapped/c.fasta
abstar/germline_dbs/bcr/macaque/imgt_gapped/d.fasta
abstar/germline_dbs/bcr/macaque/imgt_gapped/j.fasta
abstar/germline_dbs/bcr/macaque/imgt_gapped/v.fasta
abstar/germline_dbs/bcr/macaque/mmseqs/c
abstar/germline_dbs/bcr/macaque/mmseqs/c.dbtype
abstar/germline_dbs/bcr/macaque/mmseqs/c.index
abstar/germline_dbs/bcr/macaque/mmseqs/c.lookup
abstar/germline_dbs/bcr/macaque/mmseqs/c.source
abstar/germline_dbs/bcr/macaque/mmseqs/c_h
abstar/germline_dbs/bcr/macaque/mmseqs/c_h.dbtype
abstar/germline_dbs/bcr/macaque/mmseqs/c_h.index
abstar/germline_dbs/bcr/macaque/mmseqs/d
abstar/germline_dbs/bcr/macaque/mmseqs/d.dbtype
abstar/germline_dbs/bcr/macaque/mmseqs/d.index
abstar/germline_dbs/bcr/macaque/mmseqs/d.lookup
abstar/germline_dbs/bcr/macaque/mmseqs/d.source
abstar/germline_dbs/bcr/macaque/mmseqs/d_h
abstar/germline_dbs/bcr/macaque/mmseqs/d_h.dbtype
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abstar/germline_dbs/bcr/macaque/mmseqs/j
abstar/germline_dbs/bcr/macaque/mmseqs/j.dbtype
abstar/germline_dbs/bcr/macaque/mmseqs/j.index
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abstar/germline_dbs/bcr/macaque/mmseqs/j_h
abstar/germline_dbs/bcr/macaque/mmseqs/j_h.dbtype
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abstar/germline_dbs/bcr/macaque/mmseqs/v
abstar/germline_dbs/bcr/macaque/mmseqs/v.dbtype
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abstar/germline_dbs/bcr/macaque/mmseqs/v.source
abstar/germline_dbs/bcr/macaque/mmseqs/v_h
abstar/germline_dbs/bcr/macaque/mmseqs/v_h.dbtype
abstar/germline_dbs/bcr/macaque/mmseqs/v_h.index
abstar/germline_dbs/bcr/macaque/ungapped/c.fasta
abstar/germline_dbs/bcr/macaque/ungapped/d.fasta
abstar/germline_dbs/bcr/macaque/ungapped/j.fasta
abstar/germline_dbs/bcr/macaque/ungapped/v.fasta
abstar/germline_dbs/tcr/human/manifest.txt
abstar/germline_dbs/tcr/human/imgt_gapped/c.fasta
abstar/germline_dbs/tcr/human/imgt_gapped/d.fasta
abstar/germline_dbs/tcr/human/imgt_gapped/j.fasta
abstar/germline_dbs/tcr/human/imgt_gapped/v.fasta
abstar/germline_dbs/tcr/human/mmseqs/c
abstar/germline_dbs/tcr/human/mmseqs/c.dbtype
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abstar/germline_dbs/tcr/human/mmseqs/v_h.dbtype
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abstar/germline_dbs/tcr/human/ungapped/c.fasta
abstar/germline_dbs/tcr/human/ungapped/d.fasta
abstar/germline_dbs/tcr/human/ungapped/j.fasta
abstar/germline_dbs/tcr/human/ungapped/v.fasta
abstar/preprocess/__init__.py
abstar/preprocess/merging.py
abstar/scripts/__init__.py
abstar/scripts/abstar.py
abstar/test_data/test.fastq
abstar/test_data/test_1k.fasta
abstar/test_data/test_get_isotype.csv
abstar/test_data/test_hiv_bnab_hcs.fasta
abstar/test_data/test_hiv_bnab_lcs.fasta
abstar/test_data/test_isotype.fasta
abstar/tests/__init__.py
abstar/tests/test_germline.py
abstar/tests/test_indels.py
abstar/tests/test_integration.py
abstar/tests/test_mutations.py
abstar/tests/test_positions.py
abstar/tests/test_productivity.py
abstar/tests/test_regions.py
abstar/utils/__init__.py
abstar/utils/build_germline_dbs_OLD.py
abstar/utils/callbacks.py
abstar/utils/mixins.py
docs/doc_requirements.txt