MANIFEST.in
README.md
requirements.txt
setup.cfg
setup.py
abstar/__init__.py
abstar/celeryconfig.py
abstar/preprocess.py
abstar.egg-info/PKG-INFO
abstar.egg-info/SOURCES.txt
abstar.egg-info/dependency_links.txt
abstar.egg-info/pbr.json
abstar.egg-info/requires.txt
abstar.egg-info/top_level.txt
abstar/assigners/.DS_Store
abstar/assigners/__init__.py
abstar/assigners/assigner.py
abstar/assigners/blastn.py
abstar/assigners/mixcr.py
abstar/assigners/partis.py
abstar/assigners/registry.py
abstar/assigners/bin/blastn_darwin
abstar/assigners/bin/blastn_linux
abstar/assigners/bin/makeblastdb_darwin
abstar/assigners/bin/makeblastdb_linux
abstar/assigners/germline_dbs/.DS_Store
abstar/assigners/germline_dbs/human/manifest.txt
abstar/assigners/germline_dbs/human/blast/d.blastlog
abstar/assigners/germline_dbs/human/blast/d.blastlog.perf
abstar/assigners/germline_dbs/human/blast/d.nhr
abstar/assigners/germline_dbs/human/blast/d.nin
abstar/assigners/germline_dbs/human/blast/d.nog
abstar/assigners/germline_dbs/human/blast/d.nsd
abstar/assigners/germline_dbs/human/blast/d.nsi
abstar/assigners/germline_dbs/human/blast/d.nsq
abstar/assigners/germline_dbs/human/blast/j.blastlog
abstar/assigners/germline_dbs/human/blast/j.blastlog.perf
abstar/assigners/germline_dbs/human/blast/j.nhr
abstar/assigners/germline_dbs/human/blast/j.nin
abstar/assigners/germline_dbs/human/blast/j.nog
abstar/assigners/germline_dbs/human/blast/j.nsd
abstar/assigners/germline_dbs/human/blast/j.nsi
abstar/assigners/germline_dbs/human/blast/j.nsq
abstar/assigners/germline_dbs/human/blast/v.blastlog
abstar/assigners/germline_dbs/human/blast/v.blastlog.perf
abstar/assigners/germline_dbs/human/blast/v.nhr
abstar/assigners/germline_dbs/human/blast/v.nin
abstar/assigners/germline_dbs/human/blast/v.nog
abstar/assigners/germline_dbs/human/blast/v.nsd
abstar/assigners/germline_dbs/human/blast/v.nsi
abstar/assigners/germline_dbs/human/blast/v.nsq
abstar/assigners/germline_dbs/human/imgt_gapped/d.fasta
abstar/assigners/germline_dbs/human/imgt_gapped/j.fasta
abstar/assigners/germline_dbs/human/imgt_gapped/v.fasta
abstar/assigners/germline_dbs/human/isotypes/isotypes.fasta
abstar/assigners/germline_dbs/human/ungapped/d.fasta
abstar/assigners/germline_dbs/human/ungapped/j.fasta
abstar/assigners/germline_dbs/human/ungapped/v.fasta
abstar/assigners/germline_dbs/macaque/blast/d.blastlog
abstar/assigners/germline_dbs/macaque/blast/d.blastlog.perf
abstar/assigners/germline_dbs/macaque/blast/d.nhr
abstar/assigners/germline_dbs/macaque/blast/d.nin
abstar/assigners/germline_dbs/macaque/blast/d.nog
abstar/assigners/germline_dbs/macaque/blast/d.nsd
abstar/assigners/germline_dbs/macaque/blast/d.nsi
abstar/assigners/germline_dbs/macaque/blast/d.nsq
abstar/assigners/germline_dbs/macaque/blast/j.blastlog
abstar/assigners/germline_dbs/macaque/blast/j.blastlog.perf
abstar/assigners/germline_dbs/macaque/blast/j.nhr
abstar/assigners/germline_dbs/macaque/blast/j.nin
abstar/assigners/germline_dbs/macaque/blast/j.nog
abstar/assigners/germline_dbs/macaque/blast/j.nsd
abstar/assigners/germline_dbs/macaque/blast/j.nsi
abstar/assigners/germline_dbs/macaque/blast/j.nsq
abstar/assigners/germline_dbs/macaque/blast/v.blastlog
abstar/assigners/germline_dbs/macaque/blast/v.blastlog.perf
abstar/assigners/germline_dbs/macaque/blast/v.nhr
abstar/assigners/germline_dbs/macaque/blast/v.nin
abstar/assigners/germline_dbs/macaque/blast/v.nog
abstar/assigners/germline_dbs/macaque/blast/v.nsd
abstar/assigners/germline_dbs/macaque/blast/v.nsi
abstar/assigners/germline_dbs/macaque/blast/v.nsq
abstar/assigners/germline_dbs/macaque/imgt_gapped/d.fasta
abstar/assigners/germline_dbs/macaque/imgt_gapped/j.fasta
abstar/assigners/germline_dbs/macaque/imgt_gapped/v.fasta
abstar/assigners/germline_dbs/macaque/isotypes/isotypes.fasta
abstar/assigners/germline_dbs/macaque/ungapped/d.fasta
abstar/assigners/germline_dbs/macaque/ungapped/j.fasta
abstar/assigners/germline_dbs/macaque/ungapped/v.fasta
abstar/assigners/germline_dbs/mouse/manifest.txt
abstar/assigners/germline_dbs/mouse/blast/d.blastlog
abstar/assigners/germline_dbs/mouse/blast/d.blastlog.perf
abstar/assigners/germline_dbs/mouse/blast/d.nhr
abstar/assigners/germline_dbs/mouse/blast/d.nin
abstar/assigners/germline_dbs/mouse/blast/d.nog
abstar/assigners/germline_dbs/mouse/blast/d.nsd
abstar/assigners/germline_dbs/mouse/blast/d.nsi
abstar/assigners/germline_dbs/mouse/blast/d.nsq
abstar/assigners/germline_dbs/mouse/blast/j.blastlog
abstar/assigners/germline_dbs/mouse/blast/j.blastlog.perf
abstar/assigners/germline_dbs/mouse/blast/j.nhr
abstar/assigners/germline_dbs/mouse/blast/j.nin
abstar/assigners/germline_dbs/mouse/blast/j.nog
abstar/assigners/germline_dbs/mouse/blast/j.nsd
abstar/assigners/germline_dbs/mouse/blast/j.nsi
abstar/assigners/germline_dbs/mouse/blast/j.nsq
abstar/assigners/germline_dbs/mouse/blast/v.blastlog
abstar/assigners/germline_dbs/mouse/blast/v.blastlog.perf
abstar/assigners/germline_dbs/mouse/blast/v.nhr
abstar/assigners/germline_dbs/mouse/blast/v.nin
abstar/assigners/germline_dbs/mouse/blast/v.nog
abstar/assigners/germline_dbs/mouse/blast/v.nsd
abstar/assigners/germline_dbs/mouse/blast/v.nsi
abstar/assigners/germline_dbs/mouse/blast/v.nsq
abstar/assigners/germline_dbs/mouse/imgt_gapped/d.fasta
abstar/assigners/germline_dbs/mouse/imgt_gapped/j.fasta
abstar/assigners/germline_dbs/mouse/imgt_gapped/v.fasta
abstar/assigners/germline_dbs/mouse/isotypes/isotypes.fasta
abstar/assigners/germline_dbs/mouse/ungapped/d.fasta
abstar/assigners/germline_dbs/mouse/ungapped/j.fasta
abstar/assigners/germline_dbs/mouse/ungapped/v.fasta
abstar/assigners/germline_dbs/vrc01mouse/manifest.txt
abstar/assigners/germline_dbs/vrc01mouse/blast/d.blastlog
abstar/assigners/germline_dbs/vrc01mouse/blast/d.blastlog.perf
abstar/assigners/germline_dbs/vrc01mouse/blast/d.nhr
abstar/assigners/germline_dbs/vrc01mouse/blast/d.nin
abstar/assigners/germline_dbs/vrc01mouse/blast/d.nog
abstar/assigners/germline_dbs/vrc01mouse/blast/d.nsd
abstar/assigners/germline_dbs/vrc01mouse/blast/d.nsi
abstar/assigners/germline_dbs/vrc01mouse/blast/d.nsq
abstar/assigners/germline_dbs/vrc01mouse/blast/j.blastlog
abstar/assigners/germline_dbs/vrc01mouse/blast/j.blastlog.perf
abstar/assigners/germline_dbs/vrc01mouse/blast/j.nhr
abstar/assigners/germline_dbs/vrc01mouse/blast/j.nin
abstar/assigners/germline_dbs/vrc01mouse/blast/j.nog
abstar/assigners/germline_dbs/vrc01mouse/blast/j.nsd
abstar/assigners/germline_dbs/vrc01mouse/blast/j.nsi
abstar/assigners/germline_dbs/vrc01mouse/blast/j.nsq
abstar/assigners/germline_dbs/vrc01mouse/blast/v.blastlog
abstar/assigners/germline_dbs/vrc01mouse/blast/v.blastlog.perf
abstar/assigners/germline_dbs/vrc01mouse/blast/v.nhr
abstar/assigners/germline_dbs/vrc01mouse/blast/v.nin
abstar/assigners/germline_dbs/vrc01mouse/blast/v.nog
abstar/assigners/germline_dbs/vrc01mouse/blast/v.nsd
abstar/assigners/germline_dbs/vrc01mouse/blast/v.nsi
abstar/assigners/germline_dbs/vrc01mouse/blast/v.nsq
abstar/assigners/germline_dbs/vrc01mouse/imgt_gapped/d.fasta
abstar/assigners/germline_dbs/vrc01mouse/imgt_gapped/j.fasta
abstar/assigners/germline_dbs/vrc01mouse/imgt_gapped/v.fasta
abstar/assigners/germline_dbs/vrc01mouse/isotypes/isotypes.fasta
abstar/assigners/germline_dbs/vrc01mouse/ungapped/d.fasta
abstar/assigners/germline_dbs/vrc01mouse/ungapped/j.fasta
abstar/assigners/germline_dbs/vrc01mouse/ungapped/v.fasta
abstar/core/__init__.py
abstar/core/__init__.pyc
abstar/core/abstar.py
abstar/core/abstar.pyc
abstar/core/antibody.py
abstar/core/germline.py
abstar/core/germline.pyc
abstar/core/jobs.py
abstar/core/vdj.py
abstar/core/vdj.pyc
abstar/test_data/.DS_Store
abstar/test_data/test_1k.fasta
abstar/utils/.DS_Store
abstar/utils/__init__.py
abstar/utils/__init__.pyc
abstar/utils/basespace.py
abstar/utils/basespace.pyc
abstar/utils/basespace_credentials.py
abstar/utils/build_germline_dbs.py
abstar/utils/indels.py
abstar/utils/indels.pyc
abstar/utils/isotype.py
abstar/utils/isotype.pyc
abstar/utils/junction.py
abstar/utils/junction.pyc
abstar/utils/mixins.py
abstar/utils/mixins.pyc
abstar/utils/mongoimport.py
abstar/utils/mongoimport.pyc
abstar/utils/mutations.py
abstar/utils/mutations.pyc
abstar/utils/output.py
abstar/utils/output.pyc
abstar/utils/pandaseq.py
abstar/utils/pandaseq.pyc
abstar/utils/productivity.py
abstar/utils/productivity.pyc
abstar/utils/regions.py
abstar/utils/regions.pyc
abstar/utils/queue/__init__.py
abstar/utils/queue/__init__.pyc
abstar/utils/queue/celery.py
abstar/utils/queue/celery.pyc
abstar/utils/queue/tasks.py
bin/.DS_Store
bin/abstar
bin/basespace_downloader
bin/batch_mongoimport
bin/build_abstar_germline_db
bin/make_basespace_credfile
docs/doc_requirements.txt