MANIFEST.in
README.md
pyproject.toml
setup.py
AABY.egg-info/PKG-INFO
AABY.egg-info/SOURCES.txt
AABY.egg-info/dependency_links.txt
AABY.egg-info/entry_points.txt
AABY.egg-info/top_level.txt
aaby/__init__.py
aaby/cli.py
aaby/main.py
aaby/utils.py
aaby/workflow.py
aaby/data/tleap.in
aaby/resources/SSBOND.txt
aaby/resources/protonations.txt
aaby/resources/COBY_toppar/CHL.itp
aaby/resources/COBY_toppar/DAPC.itp
aaby/resources/COBY_toppar/DLPC.itp
aaby/resources/COBY_toppar/DLPG.itp
aaby/resources/COBY_toppar/DMPC.itp
aaby/resources/COBY_toppar/DMPG.itp
aaby/resources/COBY_toppar/DOPC.itp
aaby/resources/COBY_toppar/DOPG.itp
aaby/resources/COBY_toppar/DOPS.itp
aaby/resources/COBY_toppar/DPPC.itp
aaby/resources/COBY_toppar/DPPG.itp
aaby/resources/COBY_toppar/DSPC.itp
aaby/resources/COBY_toppar/DSPG.itp
aaby/resources/COBY_toppar/POPA.itp
aaby/resources/COBY_toppar/POPC.itp
aaby/resources/COBY_toppar/POPE.itp
aaby/resources/COBY_toppar/POPG.itp
aaby/resources/COBY_toppar/POPS.itp
aaby/resources/COBY_toppar/PSM.itp
aaby/resources/COBY_toppar/SDPC.itp
aaby/resources/COBY_toppar/SSM.itp
aaby/resources/mdps/MEMBRANE/mdout.mdp
aaby/resources/mdps/MEMBRANE/step5_mini.mdp
aaby/resources/mdps/MEMBRANE/step6.0_minimization.mdp
aaby/resources/mdps/MEMBRANE/step6.1_equilibration.mdp
aaby/resources/mdps/MEMBRANE/step6.2_equilibration.mdp
aaby/resources/mdps/MEMBRANE/step6.3_equilibration.mdp
aaby/resources/mdps/MEMBRANE/step6.4_equilibration.mdp
aaby/resources/mdps/MEMBRANE/step6.5_equilibration.mdp
aaby/resources/mdps/MEMBRANE/step6.6_equilibration.mdp
aaby/resources/mdps/MEMBRANE/step6_mini.mdp
aaby/resources/mdps/MEMBRANE/step7_production.mdp
aaby/resources/mdps/MEMBRANE_CG/mdout.mdp
aaby/resources/mdps/MEMBRANE_CG/step5_mini.mdp
aaby/resources/mdps/MEMBRANE_CG/step6.0_minimization.mdp
aaby/resources/mdps/MEMBRANE_CG/step6.1_equilibration.mdp
aaby/resources/mdps/MEMBRANE_CG/step6.2_equilibration.mdp
aaby/resources/mdps/MEMBRANE_CG/step6.3_equilibration.mdp
aaby/resources/mdps/MEMBRANE_CG/step6.4_equilibration.mdp
aaby/resources/mdps/MEMBRANE_CG/step6.5_equilibration.mdp
aaby/resources/mdps/MEMBRANE_CG/step6.6_equilibration.mdp
aaby/resources/mdps/MEMBRANE_CG/step6_mini.mdp
aaby/resources/mdps/MEMBRANE_CG/step7_production.mdp
aaby/resources/mdps/MEMBRANE_vac/step6.1_equilibration_vac.mdp
aaby/resources/mdps/MEMBRANE_vac/step6.2_equilibration_vac.mdp
aaby/resources/mdps/MEMBRANE_vac/step6.3_equilibration_vac.mdp
aaby/resources/mdps/MEMBRANE_vac/step6.4_equilibration_vac.mdp
aaby/resources/mdps/MEMBRANE_vac/step6.5_equilibration_vac.mdp
aaby/resources/mdps/MEMBRANE_vac/step6.6_equilibration_vac.mdp
aaby/resources/mdps/MEMBRANE_vac_CGUI/step6.1_equilibration_vac.mdp
aaby/resources/mdps/MEMBRANE_vac_CGUI/step6.2_equilibration_vac.mdp
aaby/resources/mdps/MEMBRANE_vac_CGUI/step6.3_equilibration_vac.mdp
aaby/resources/mdps/MEMBRANE_vac_CGUI/step6.4_equilibration_vac.mdp
aaby/resources/mdps/MEMBRANE_vac_CGUI/step6.5_equilibration_vac.mdp
aaby/resources/mdps/MEMBRANE_vac_CGUI/step6.6_equilibration_vac.mdp
aaby/resources/mdps/SOLUTION/mdout.mdp
aaby/resources/mdps/SOLUTION/step5_mini.mdp
aaby/resources/mdps/SOLUTION/step6.0_minimization.mdp
aaby/resources/mdps/SOLUTION/step6.1_equilibration.mdp
aaby/resources/mdps/SOLUTION/step6.2_equilibration.mdp
aaby/resources/mdps/SOLUTION/step6.3_equilibration.mdp
aaby/resources/mdps/SOLUTION/step6.4_equilibration.mdp
aaby/resources/mdps/SOLUTION/step6.5_equilibration.mdp
aaby/resources/mdps/SOLUTION/step6.6_equilibration.mdp
aaby/resources/mdps/SOLUTION/step6_mini.mdp
aaby/resources/mdps/SOLUTION/step7_production.mdp
aaby/resources/mdps/SOLUTION_CG/step5_mini.mdp
aaby/resources/mdps/SOLUTION_CG/step6.0_minimization.mdp
aaby/resources/mdps/SOLUTION_CG/step6.1_equilibration.mdp
aaby/resources/mdps/SOLUTION_CG/step6.2_equilibration.mdp
aaby/resources/mdps/SOLUTION_CG/step6.3_equilibration.mdp
aaby/resources/mdps/SOLUTION_CG/step6.4_equilibration.mdp
aaby/resources/mdps/SOLUTION_CG/step6.5_equilibration.mdp
aaby/resources/mdps/SOLUTION_CG/step6.6_equilibration.mdp
aaby/resources/mdps/SOLUTION_CG/step6_mini.mdp
aaby/resources/mdps/SOLUTION_CG/step7_production.mdp
aaby/resources/models/CHL.pdb
aaby/resources/models/DAPC.pdb
aaby/resources/models/DLPC.pdb
aaby/resources/models/DLPG.pdb
aaby/resources/models/DMPC.pdb
aaby/resources/models/DMPG.pdb
aaby/resources/models/DOPC.pdb
aaby/resources/models/DOPG.pdb
aaby/resources/models/DOPS.pdb
aaby/resources/models/DPPC.pdb
aaby/resources/models/DPPG.pdb
aaby/resources/models/DSPC.pdb
aaby/resources/models/DSPG.pdb
aaby/resources/models/POPA.pdb
aaby/resources/models/POPC.pdb
aaby/resources/models/POPC_rotated.pdb
aaby/resources/models/POPE.pdb
aaby/resources/models/POPG.pdb
aaby/resources/models/POPS.pdb
aaby/resources/models/PSM.pdb
aaby/resources/models/SDPC.pdb
aaby/resources/models/SSM.pdb
aaby/resources/models/ion.gro
aaby/resources/models/ion.pdb
aaby/resources/models/opc.gro
aaby/resources/models/spc216.gro
aaby/resources/models/tip3p.gro
aaby/resources/models/tip4p.gro
aaby/resources/models/tip4pew.gro
aaby/resources/models/tip5p.gro
aaby/resources/tleap/tleap.in
aaby/resources/tleap/tleap_solv.in
aaby/resources/toppar/7SL6_prot.pdb
aaby/resources/toppar/ACE.itp
aaby/resources/toppar/CHL.itp
aaby/resources/toppar/CHL.pdb
aaby/resources/toppar/CHL1.pdb
aaby/resources/toppar/CHL_equil.pdb
aaby/resources/toppar/CHL_princ.pdb
aaby/resources/toppar/CHL_rotated.pdb
aaby/resources/toppar/Cl-.itp
aaby/resources/toppar/NME.itp
aaby/resources/toppar/Na+.itp
aaby/resources/toppar/OPC.itp
aaby/resources/toppar/OPC.pdb
aaby/resources/toppar/POPC.itp
aaby/resources/toppar/POPC.pdb
aaby/resources/toppar/POPC_equil.pdb
aaby/resources/toppar/POPC_princ.pdb
aaby/resources/toppar/POPC_rotated.pdb
aaby/resources/toppar/SSBOND.txt
aaby/resources/toppar/WAT.itp
aaby/resources/toppar/ff.itp
aaby/resources/toppar/forcefield.itp
aaby/scripts/AABY.py
aaby/scripts/__init__.py
aaby/scripts/add_ace_nme.py
aaby/scripts/add_ter.py
aaby/scripts/change_prot.py
aaby/scripts/convert_and_split.py
aaby/scripts/generate_restraints.py
aaby/scripts/pka.py
aaby/scripts/prepare_for_simulations.py
aaby/scripts/re_ss.py
aaby/scripts/renameChain.py
aaby/scripts/renamePOPC.py
aaby/scripts/resolvate_replicas.py